View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_high_9 (Length: 330)
Name: NF6136_high_9
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 32896588 - 32896907
Alignment:
| Q |
1 |
ctattaattctaataaagcactgcctaaatttaatttaacttgtcaannnnnnnngtcaaccttttacttttgtcattaatttgttctattattacttga |
100 |
Q |
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| T |
32896588 |
ctattaattctaataaagcactgcctaaatttagtttaacttgtcaattttttttgtcaaccttttacttttgtcattaatttgttctattattacttga |
32896687 |
T |
|
| Q |
101 |
atatatgatgtatcaacttataaatttttctgttatttatttcggttagttggaaaagatcataaaagcatagcgagaacttggaaaaaagaccataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896688 |
atatatgatgtatcaacttataaatttttctgttatttatttcggttagttggaaaagatcataaaagcatagcgagaacttggaaaaaagaccataaaa |
32896787 |
T |
|
| Q |
201 |
acatgaaaatgtagtggcttagggaatgcattagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896788 |
acatgaaaatgtagtggcttagggaatgcattagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcatta |
32896887 |
T |
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| Q |
301 |
catgccaatccagctctgtg |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32896888 |
catgccaatccagctctgtg |
32896907 |
T |
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