View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6136_low_10 (Length: 346)

Name: NF6136_low_10
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6136_low_10
NF6136_low_10
[»] chr2 (1 HSPs)
chr2 (65-346)||(37979584-37979865)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 65 - 346
Target Start/End: Original strand, 37979584 - 37979865
Alignment:
Q  65 agacctaagagaacaatatccatatgtaataagatttcagtaagaaaagactgattttccattagacgaaggcttaaataatgtaatcttctcgcaagta 164  Q
    |||| ||||||| |||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37979584 agacttaagagagcaatttccatatgtagtaagatttcagtaagtaaagtctgattttccattagacgaaggcttaaataatgtaatcttctcgcaagta 37979683  T
Q  165 tcttgaagtagaagttgattgggatcttcccagctccatgaccatccatagtgtaatacaagacataaaaatccatttgacaaagttgaaaacttgcatg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37979684 tcttgaagtagaagttgattgggatcttcccagctccatgaccatccatagtgtaatacaagacataaaaatccatttgacaaagttgaacacttgcatg 37979783  T
Q  265 gaagagatacaacaagagtcacgatcccaaactcaagcatctttccaaaagaggacatgatcaccattttgaatacactaaa 346  Q
    |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  37979784 gaagagatacaacaagggtcacgatcccaaattcaagtatctttccaaaagaggacatgattaccattttgaatacactaaa 37979865  T

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