View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_low_12 (Length: 318)
Name: NF6136_low_12
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 300
Target Start/End: Original strand, 8846051 - 8846346
Alignment:
| Q |
5 |
tggaaggaggcgtaccattcaatagggtttatggcatgcatgcatttgaatacacacttacagatccaaggttcaatgatgttttcaacaatgctatggt |
104 |
Q |
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| T |
8846051 |
tggaaggaggcataccattcaatagggtttatggcatgcatgcatttgaatatccaattgtggatccaaggtttaatgatgttttcaacaatgctatggc |
8846150 |
T |
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| Q |
105 |
caattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgggatcaat |
204 |
Q |
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| T |
8846151 |
caattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgggatcaat |
8846250 |
T |
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| Q |
205 |
ctcaagctaattacttctaaatatcctcaaatacatggtgtcaattttgacttgcctcacgtcctagaacatgcacctacctatgaaggtatattt |
300 |
Q |
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| T |
8846251 |
cttaagctaattacttctaaatatcctcatatacatggtgttaattttgacttgcctcacgtcctagaacatgcaccttcctatgacggtatattt |
8846346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 28699379 - 28699288
Alignment:
| Q |
172 |
cttgttgatgttggtggtggtcttgggatcaatctcaagctaattacttctaaatatcctcaaatacatggtgtcaattttgacttgcctca |
263 |
Q |
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| T |
28699379 |
cttgttgatgttggaggtggtcttgggatcaacattaacttgatcacttcaaaacaccctcatatacacggtatcaatttcgacttgcctca |
28699288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 49098763 - 49098490
Alignment:
| Q |
5 |
tggaaggaggcgtaccattcaatagggtttatggcatgcatgcatttgaatacacacttacagatccaaggttcaatgatgttttcaacaatgctatggt |
104 |
Q |
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| T |
49098763 |
tggaaggaggaatagcgttcaatagggtttatggaatgcatgcgtttgagtatccacgtgtggacccaaggttcaatgatgttttcaacaaagctatggt |
49098664 |
T |
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| Q |
105 |
caattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgggatcaat |
204 |
Q |
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| T |
49098663 |
taattcaacaactataaacatgaagaggattattgattgttatcaaggttttgaccacataactaagctagttgatgttggtggtggtcttggaattaac |
49098564 |
T |
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| Q |
205 |
ctcaagctaattacttctaaatatcctcaaatacatggtgtcaattttgacttgcctcacgtcctagaacatgc |
278 |
Q |
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| T |
49098563 |
ctcaaattaatcacatccaaatattcacatattcagggaattaattttgacttgcctcatgtactacaacatgc |
49098490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 288
Target Start/End: Complemental strand, 49109761 - 49109588
Alignment:
| Q |
115 |
actatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgggatcaatctcaagctaa |
214 |
Q |
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| T |
49109761 |
actatagttatgaacaaggttcttcaatcctacaaaggttttgaagatgtcaagaggcttgtggatgttggtggaggtcttggtgtcaacattaacttaa |
49109662 |
T |
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| Q |
215 |
ttacttctaaatatcctcaaatacatggtgtcaattttgacttgcctcacgtcctagaacatgcacctacctat |
288 |
Q |
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| T |
49109661 |
tcacttcaaaacaccctcatatacatggtatcaatttcgacttgcctcatgtcatacaacatgccccttcctat |
49109588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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