View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_low_16 (Length: 303)
Name: NF6136_low_16
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_16 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 38312938 - 38313227
Alignment:
| Q |
15 |
cagatatactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312938 |
cagatatactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatat |
38313037 |
T |
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| Q |
115 |
gtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaatatacaaacagaacacaaaagttagatatc-aaatcactattac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38313038 |
gtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaatatacaaacagaacacaaaagttagatatcaaaatcactattac |
38313137 |
T |
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| Q |
214 |
aagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaaccaacaaagctgcaaa |
303 |
Q |
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| T |
38313138 |
aagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaaccaacaaagctgcaaa |
38313227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 38280075 - 38280191
Alignment:
| Q |
26 |
atcataggagtacctcttgataaggttgtctgtgtcatagaca--atgtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaact |
123 |
Q |
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|||||| ||| |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
38280075 |
atcatatgagaacctctcgataaggttgtatgtgtcatagacacaatgtagccagaaaatataatagctccaagacacccatagat-atatgtgacaact |
38280173 |
T |
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| Q |
124 |
ttcccaatggaaacagaa |
141 |
Q |
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| T |
38280174 |
tatccaatggaaacagaa |
38280191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 38271395 - 38271510
Alignment:
| Q |
21 |
tactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgtgaca |
120 |
Q |
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|||||||||| ||| |||||||| |||||||||| |||||| || |||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
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| T |
38271395 |
tactcatcatttgagaacctcttgttaaggttgtccgtgtcaatgaaaatgtagccataaaatataatagctccaagacacccatagatcaaatgtgaca |
38271494 |
T |
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| Q |
121 |
actttcccaatggaaa |
136 |
Q |
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|||| |||||||||| |
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| T |
38271495 |
acttatccaatggaaa |
38271510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 38275146 - 38275262
Alignment:
| Q |
21 |
tactcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgtgaca |
120 |
Q |
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|||||||||| ||| || ||||| ||||||||||||||||| || ||||| |||| |||||||||||||| |||||||||||||||||| |||||||| |
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| T |
38275146 |
tactcatcatttgagaacttcttgttaaggttgtctgtgtcaacgaaaatgtggccataaaatataatagctacaagacacccatagatcacatgtgaca |
38275245 |
T |
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| Q |
121 |
actttcccaatggaaac |
137 |
Q |
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|||| ||||||||||| |
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| T |
38275246 |
acttatccaatggaaac |
38275262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 38271548 - 38271655
Alignment:
| Q |
192 |
ttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaacca |
290 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||| |||| |||| ||| ||||||| |||| |||| | ||||||| | |||||||| |
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| T |
38271548 |
ttagatatcaaaatcactattataagggctaatttgccaattaattacactctaaatagagagcaaaataccagaatcagagcaaagagaataagaacca |
38271647 |
T |
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| Q |
291 |
acaaagct |
298 |
Q |
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|||||||| |
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| T |
38271648 |
acaaagct |
38271655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 38290219 - 38290327
Alignment:
| Q |
29 |
ataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttccc |
128 |
Q |
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||||||| ||||||||||| |||||| ||| | ||| || || | ||| |||||||||||| || || ||||||| ||||||||||||||| || || |
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| T |
38290219 |
ataggagaacctcttgatatggttgtatgtatgatacacgatacaaccacaaaatataatagatgtaaagcacccatggatcatatgtgacaatttacct |
38290318 |
T |
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| Q |
129 |
aatggaaac |
137 |
Q |
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||||||||| |
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| T |
38290319 |
aatggaaac |
38290327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 45584766 - 45584727
Alignment:
| Q |
25 |
catcataggagtacctcttgataaggttgtctgtgtcata |
64 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| |
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| T |
45584766 |
catcataggagaacctcttgataaggttgtttgtgtcata |
45584727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 38280223 - 38280269
Alignment:
| Q |
192 |
ttagatatcaaa-tcactattacaagggctaatttgccaatttatta |
237 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
38280223 |
ttagatatcaaaatcactattataagggctaatttgccaattaatta |
38280269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 38308982 - 38309022
Alignment:
| Q |
129 |
aatggaaacagaatctgcaagaaaaggatcacactgttaaa |
169 |
Q |
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|||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
38308982 |
aatggaaacaaaatctgcaacaaaatgatcacactgttaaa |
38309022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 31701348 - 31701225
Alignment:
| Q |
24 |
tcatcataggagtacctcttgataaggttgtctgtgtcatagacaatgtagccagaaaatataatagctgcaagacacccatagatcatatgt-gacaac |
122 |
Q |
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|||||||| ||||| |||||||| | ||||||||| ||||| | ||||||||| |||||||||| ||||| | || ||||||||||| ||| || ||| |
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| T |
31701348 |
tcatcataagagtatctcttgatcaagttgtctgtatcatataggatgtagccacaaaatataattgctgccaagcaaccatagatcat-tgtagataac |
31701250 |
T |
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| Q |
123 |
tttcccaatggaaacagaatctgca |
147 |
Q |
| |
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|| ||||||||||| | |||||||| |
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| T |
31701249 |
ttgcccaatggaaagaaaatctgca |
31701225 |
T |
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