View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_low_2 (Length: 691)
Name: NF6136_low_2
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 143 - 676
Target Start/End: Complemental strand, 11471311 - 11470782
Alignment:
| Q |
143 |
cacaaataaagccccccaaaatgacataagt-agtatttgaagccgatgaagattatttagatgacaatgattaatgacaatcaagttgaaaacttaaga |
241 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11471311 |
cacaaataaagccccccaaaatgacataagttagtatttgaagccgatgaagattatttagatgacaatgattaatgacaatcaagttgaaaatttaaga |
11471212 |
T |
|
| Q |
242 |
tttcaaagttaaacatgaaaatgaaaagttgcatgattcaattgttacaaactggcaaatgtaatgtatggttcaaaactaagtttcatcaaaacgttta |
341 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11471211 |
tttcaaagttaaacatgaaaatgagaagttgcatgatacaattgttacaaactagcaaatgcaatgtatggttcaaaactaagtttcatcaaaacgttta |
11471112 |
T |
|
| Q |
342 |
gagttatacaaatatattgagaaaggataacgatgaaacaacnnnnnnnntgtaaaggaagattcttgttgataaatttcgacaagattacataatatta |
441 |
Q |
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| T |
11471111 |
gagttatacaaatatattcagaaaggataacgatgaaacagcaaaaaaaatgtaaaggaagattcttgttgataaatttcgacaagattacataatgtt- |
11471013 |
T |
|
| Q |
442 |
atgttggaatattacaaagataggtaaggttacattcaaatgaattgttttgtcgaaagataaaagtacatgatatctccctccaagaggccaagccatg |
541 |
Q |
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| T |
11471012 |
----tggaatattacaaagatagataaggttacattcaaatgaattgttttgtcgaaagacaaaagtacatgatatctccctccaagaggccaagccatg |
11470917 |
T |
|
| Q |
542 |
gggaaaagttggatatgaagcacgaaattacaggaaacaaaaagagcacaaagtgtattccttcaacggttatcagtttggccgaaatgctattgcctgt |
641 |
Q |
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| T |
11470916 |
gggaaaagttggatatgaagcacgaaattacaggaaacaaaaagagcacaaagtgtattccttcaacggttatcagtttggccgaaatgctattgcctgt |
11470817 |
T |
|
| Q |
642 |
aagagattcttcggttaactaactgtgatgtaact |
676 |
Q |
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| T |
11470816 |
aagagattcttcggttaactaactgtgatgtaact |
11470782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 11319171 - 11319109
Alignment:
| Q |
34 |
atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaaaaagtcatattt |
96 |
Q |
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| T |
11319171 |
atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaagaagtcatattt |
11319109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 11477192 - 11477130
Alignment:
| Q |
34 |
atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaaaaagtcatattt |
96 |
Q |
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| T |
11477192 |
atgccattagctaggtggccagtggagctcaaagacgaagtttgaattaaagaagtcatattt |
11477130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 11318900 - 11318843
Alignment:
| Q |
94 |
tttagactctgaaccctttttagagaacaaacaatcgaaggaaaatggtcacaaataa |
151 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11318900 |
tttagactctgaaccctttttagagaacaaacaatcaaaggaaaatggtcacaaataa |
11318843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 11476921 - 11476864
Alignment:
| Q |
94 |
tttagactctgaaccctttttagagaacaaacaatcgaaggaaaatggtcacaaataa |
151 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11476921 |
tttagactctgaaccctttttagagaacaaacaatcaaaggaaaatggtcacaaataa |
11476864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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