View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_low_22 (Length: 251)
Name: NF6136_low_22
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29791967 - 29791716
Alignment:
| Q |
1 |
ctccatactagatgaccaagagaagtatgtaagaaatgaaggtgagtggtccaatgtgcaaagaaggggtgaatgggaaaaacttcacaatgccttacta |
100 |
Q |
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| T |
29791967 |
ctccatactagataaccaagagaagtatgtaagagatgaaggtgagtggtcgaatgtgcaaataaggggtgaatgggaaaaacttcaaaatgccttacta |
29791868 |
T |
|
| Q |
101 |
gagaatcaccccgtgctcatatcatatacca----------aggaaaaacttcaacataaacattgttagattgacatgattgtgaaatttaaaccaagt |
190 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29791867 |
gagaatcaccccgtgctcatatcatataccacaaaatgcataggaaatacttcaatagaaacattgttagattgacatgattgtgaaatttaaactaagt |
29791768 |
T |
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| Q |
191 |
tttgtcgtctttcgg-----aacacatttgataattataatattttatgttt |
237 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
29791767 |
tttgtcgtctttgggaacacaacacatttgataattataatattttatgttt |
29791716 |
T |
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