View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6136_low_24 (Length: 249)
Name: NF6136_low_24
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 31277659 - 31277455
Alignment:
| Q |
8 |
gagtgagatgaaaggagtaaaactaaccaagaggccaaccgagagaagcaagagcaaaaggcaaaggagcataagctgcaggggtagcaattgtagtagc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31277659 |
gagtgaaatgaaaggagtaaaactaaccaagaggccaaccgagagaagcaagagcaaaaggcaaaggagcataagctgcaggggtagcaattgtagtagc |
31277560 |
T |
|
| Q |
108 |
aacatggaaagcagcgtgcttccatgttcctttaccactcactcctccttcttctgcatcttgttcttctatcccttcctcaactgttgacctttgctct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
31277559 |
aacatggaaagcagcgtgcttccatgttcctttaccactcactcctcct---------tctttttcttctatccctacctcaactgttgacctttgttct |
31277469 |
T |
|
| Q |
208 |
ggtaaactcatttt |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31277468 |
ggtaaactcatttt |
31277455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University