View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_low_3 (Length: 621)
Name: NF6136_low_3
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 1331421 - 1331175
Alignment:
| Q |
1 |
aattgcatcaacattaacgtcattagtaccatcatgagtcgcgtcatttgcatcaacaatgtcgtcatcatcaacaaaattttcaacatgagtaataaca |
100 |
Q |
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| T |
1331421 |
aattgcatcaacattaacgtcatcagtaccatcatgagtcgcgtcatttgcatcaacaatgtcgtcattatcaacaaaattttcaacatgagtaataaca |
1331322 |
T |
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| Q |
101 |
agtgttgcacccgcgcttcaaaagccttggaggatgctatgccgtatgtattctccttgtcaacatatttatgaattgttttctttgaaacatatgc-gg |
199 |
Q |
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| T |
1331321 |
agtg--------gcacttcaaaagccttggaggatgctatgccgtatgcattctccttgtcaacatatttatgaattgttttcttcgaaacatatgcagg |
1331230 |
T |
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| Q |
200 |
gnnnnnnnnaccacgatctacattttccacaaccttccgagggattaaccaacga |
254 |
Q |
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| T |
1331229 |
tttttttttaccatgatctacattttccacaatcttccgagggatcaaccaacga |
1331175 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 9455062 - 9455002
Alignment:
| Q |
479 |
cctcctcatggtggtcctcatgagatctaactttgtcgttatcttcctcctttgtattatc |
539 |
Q |
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| T |
9455062 |
cctcctcatggtggtcctcgtgagattaaacattatcgttatcttcctcctctgtcttatc |
9455002 |
T |
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