View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6136_low_30 (Length: 238)
Name: NF6136_low_30
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31929709 - 31929930
Alignment:
| Q |
1 |
ttaaactatcgattttgacaaccttggttttgatggcttccagccagggccacgcgaccttccccaccactgtgttgtaaattggaataagaagacctcc |
100 |
Q |
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| T |
31929709 |
ttaaactatcgattttgacaaccttggttttgatggcttccagccagggccacgcgaccttccccaccactgtgttgtaaattggaataagaagacctcc |
31929808 |
T |
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| Q |
101 |
acattttacctctatcttgccattactccatgtaagtaagtactgttttcgcaaaaggactatttggttataactacgataatgattaaaatttcaaatg |
200 |
Q |
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| T |
31929809 |
acattttacctctatcttgcccttactccatgtaagtaagtactgttttggcaaaaggattatttggttataactacgataatgattaaaatttcaaatg |
31929908 |
T |
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| Q |
201 |
gacaatgaacaatgcttatttt |
222 |
Q |
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|| ||||||||||||||||||| |
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| T |
31929909 |
gagaatgaacaatgcttatttt |
31929930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 31924084 - 31924195
Alignment:
| Q |
27 |
gttttgatggcttccagccagggccacgcgaccttccccaccactgtgttgtaaattggaataagaagacctccacattttacctctatcttgccattac |
126 |
Q |
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||||||||| ||| |||||||| ||||| || |||||||| || ||| || |||| ||| ||||||||| |||||||||||||||||||||||| |||| |
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| T |
31924084 |
gttttgatgacttacagccaggaccacgtgatcttccccatcattgtcttataaagcggagtaagaagacttccacattttacctctatcttgcccttac |
31924183 |
T |
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| Q |
127 |
tccatgtaagta |
138 |
Q |
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| T |
31924184 |
atcatgtaagta |
31924195 |
T |
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