View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6136_low_8 (Length: 427)
Name: NF6136_low_8
Description: NF6136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6136_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 23 - 416
Target Start/End: Complemental strand, 5401639 - 5401246
Alignment:
| Q |
23 |
agctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401639 |
agctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgag |
5401540 |
T |
|
| Q |
123 |
gaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggaccctttgaaatcatcggt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5401539 |
gaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggacccttcgaaatcatcggt |
5401440 |
T |
|
| Q |
223 |
aagatcaaacctcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctattacacattagaggatatcttgttcgaagaggtta |
322 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401439 |
aagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcgacacacccaatttctattacacattagaggatatcttgttcgaagaggtta |
5401340 |
T |
|
| Q |
323 |
gtgcattacacattattctcattagccttttatttcaatggtaatatacaaaataccctaagaagctcacatttgtccacttttttcctttcat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401339 |
gtgcattacacattattctcattagccttttatttcaatggtaatatacaaaataccctaagaagctcacatttgtccacttttttcctttcat |
5401246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 5395481 - 5395187
Alignment:
| Q |
34 |
ttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttc |
133 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||||||||||| || || ||||||||||| || || || || ||| | ||||| ||||||||||||| |
|
|
| T |
5395481 |
ttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttc |
5395382 |
T |
|
| Q |
134 |
aagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggaccctttgaaatcatcggtaagatcaaacc |
233 |
Q |
| |
|
|||||| ||||||||| ||| ||||||| ||||||||| ||||| || || | |||||||| ||||| |||| |||| |||||||||||||| | |
|
|
| T |
5395381 |
gagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctaggatccttcgaaacgatcggtaagatcaaggc |
5395282 |
T |
|
| Q |
234 |
tcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctattacacattagaggatatcttgttcgaagaggttagtgcat |
328 |
Q |
| |
|
|| |||||||||||||| ||| | |||||||| || | |||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
5395281 |
ccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaatttctattacacacaggaggatatcttgttagaagaggttggtgcat |
5395187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 5391670 - 5391383
Alignment:
| Q |
34 |
ttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttc |
133 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| || | || || ||| | ||||| ||||||||||||| |
|
|
| T |
5391670 |
ttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaaagttaacggttcaatgttaaggaacgtccttc |
5391571 |
T |
|
| Q |
134 |
aagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggaccctttgaaatcatcggtaagatcaaacc |
233 |
Q |
| |
|
|||||| ||||||||| ||| ||||||| |||||||| ||||| || || ||||||||| | ||| |||||||||| ||||||||||||| || |
|
|
| T |
5391570 |
gagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaaacgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagcc |
5391471 |
T |
|
| Q |
234 |
tcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctattacacattagaggatatcttgttcgaagaggtt |
321 |
Q |
| |
|
|| |||||||| ||||| ||| | |||||||| || | |||||||||||||||| ||||| ||||||||||||| | ||||||||| |
|
|
| T |
5391470 |
ccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggatatcttgctagaagaggtt |
5391383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 47349558 - 47349625
Alignment:
| Q |
142 |
atcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggaccctt |
209 |
Q |
| |
|
|||||||||||||| ||||| | ||| ||||||||||| ||||||| || |||||| |||||||||| |
|
|
| T |
47349558 |
atcccaaatgctccgaatctctgccacgtgtctcttcaaactggtgggaaacactatttaggaccctt |
47349625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University