View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6137_high_12 (Length: 228)

Name: NF6137_high_12
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6137_high_12
NF6137_high_12
[»] chr7 (2 HSPs)
chr7 (6-228)||(38634820-38635044)
chr7 (55-228)||(38632135-38632308)
[»] chr1 (10 HSPs)
chr1 (55-228)||(35190620-35190793)
chr1 (55-164)||(35147606-35147715)
chr1 (97-185)||(34309696-34309784)
chr1 (97-228)||(35295600-35295731)
chr1 (55-217)||(19266504-19266666)
chr1 (54-150)||(35216207-35216303)
chr1 (55-141)||(35208384-35208470)
chr1 (98-164)||(35248588-35248654)
chr1 (101-149)||(35200235-35200283)
chr1 (103-183)||(35225239-35225319)
[»] chr3 (2 HSPs)
chr3 (98-185)||(899465-899552)
chr3 (97-185)||(19246757-19246845)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 38634820 - 38635044
Alignment:
Q  6 atctccaaccacccatcgtttcacacatggttccaaaat--gcctaagtaaacaccaactgataacctcataagacagttcttaaatcgttgagcatcaa 103  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38634820 atctccaaccacccatcgtttcacacatggttccaaaaatagcctaagtaaacaccaactgataacctcataagacagttcttaaatcgttgagcatcaa 38634919  T
Q  104 tcatctgggacacaagataagctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaatgcatcacgaatctc 203  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  38634920 tcatctggaacacaagataagctacatactgagtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaacgcattacgaatctc 38635019  T
Q  204 aacaacttcagggagcctgtccaaa 228  Q
    |||||||||||||| ||||||||||    
T  38635020 aacaacttcagggaacctgtccaaa 38635044  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 38632135 - 38632308
Alignment:
Q  55 acaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaa 154  Q
    |||||||||||||||  || | ||  |||||  |||| |||||||||||||| || | |||||||||||||||||||||| |||||||| ||||||  ||    
T  38632135 acaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaa 38632234  T
Q  155 gagtgtttattcttccacgaatttcaagcgaaaatgcatcacgaatctcaacaacttcagggagcctgtccaaa 228  Q
    |||||| ||| |||||||||||||||||||||||  ||||||||| |||| |||||||||||| ||||||||||    
T  38632235 gagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 38632308  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 35190620 - 35190793
Alignment:
Q  55 acaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaa 154  Q
    |||||||||||||||   ||| ||||||||| ||||| ||  ||||||||||||| | |||||||||||||  |||||||||||||| ||||||||  ||    
T  35190620 acaccaactgataactctataggacagttctgaaatccttcggcatcaatcatcttgaacacaagataagccgcatactgggtatttggggacaaggcaa 35190719  T
Q  155 gagtgtttattcttccacgaatttcaagcgaaaatgcatcacgaatctcaacaacttcagggagcctgtccaaa 228  Q
    | || |||||  | |||||||| |||||| |  |  | ||| ||| |||| |||||||||||| ||||||||||    
T  35190720 gggtatttatcatcccacgaatatcaagccaccacacttcaagaagctcagcaacttcagggaacctgtccaaa 35190793  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 35147606 - 35147715
Alignment:
Q  55 acaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaa 154  Q
    |||||||||||||||   ||| ||||||||| ||||| ||  || |||||||||| | |||||||||||||  |||||||||||||| ||||||||  ||    
T  35147606 acaccaactgataactctataggacagttctgaaatccttcggcttcaatcatcttgaacacaagataagccgcatactgggtatttggggacaagctaa 35147705  T
Q  155 gagtgtttat 164  Q
    | ||||||||    
T  35147706 gggtgtttat 35147715  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 34309696 - 34309784
Alignment:
Q  97 gcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcga 185  Q
    |||| |||||||| | |||| ||||||||  ||||||| |||||| |||||||| |||||||||| ||  | |||||||||||||||||    
T  34309696 gcattaatcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacgaatttcaagcga 34309784  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 35295731 - 35295600
Alignment:
Q  97 gcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaatgcatcac 196  Q
    |||| |||||||| | |||||||||||||| |||| || |||||| ||||||||  | | ||||||||  | ||||||||||||||| | |   || |||    
T  35295731 gcattaatcatcttgaacacaagataagctgcatattgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagccatagcacagcac 35295632  T
Q  197 gaatctcaacaacttcagggagcctgtccaaa 228  Q
    ||| |||| ||||||| |||| ||||||||||    
T  35295631 gaagctcagcaacttcggggaacctgtccaaa 35295600  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 19266504 - 19266666
Alignment:
Q  55 acaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaa 154  Q
    ||||||||||||||| |||  ||| |||||||||||  ||||||| ||||||| | | |||||||| ||||| ||||| | |||||| || |||||   |    
T  19266504 acaccaactgataacatcacgagatagttcttaaattcttgagcagcaatcatattgaacacaagaaaagctgcatacagtgtattttggaacaagccga 19266603  T
Q  155 gagtgtttattcttccacgaatttcaagcgaaaatgcatcacgaatctcaacaacttcaggga 217  Q
    | |||||||| || | || |||||  |||||| |  ||| | ||||||||||||||| |||||    
T  19266604 gggtgtttatcctccgacaaatttagagcgaatacacatgatgaatctcaacaactttaggga 19266666  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 35216207 - 35216303
Alignment:
Q  54 aacaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaag 150  Q
    ||||||||||||||||  || | ||||||||| ||||| ||  |||||||||||||   |||||||||||| | ||||||| |||||| | ||||||    
T  35216207 aacaccaactgataactccagaggacagttctgaaatccttcggcatcaatcatcttaaacacaagataagttgcatactgagtatttggagacaag 35216303  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 35208384 - 35208470
Alignment:
Q  55 acaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctgggacacaagataagctacatactgggtattt 141  Q
    |||||||||||||||  |||| ||||||||| ||||| ||  ||||||||||||| | ||||||| ||| || ||| || |||||||    
T  35208384 acaccaactgataactccataggacagttctgaaatccttcggcatcaatcatcttgaacacaagttaaactgcatccttggtattt 35208470  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 35248588 - 35248654
Alignment:
Q  98 catcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaagagtgtttat 164  Q
    ||||||||| || | |||||||||||||| ||||||| |||||| ||||||||| ||  ||||||||    
T  35248588 catcaatcaccttgaacacaagataagctgcatactgagtatttggggacaagtcaatggtgtttat 35248654  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 35200235 - 35200283
Alignment:
Q  101 caatcatctgggacacaagataagctacatactgggtatttcgggacaa 149  Q
    ||||||||| | |||||||||||||| ||||||| |||||| |||||||    
T  35200235 caatcatcttgaacacaagataagctgcatactgagtatttggggacaa 35200283  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 35225239 - 35225319
Alignment:
Q  103 atcatctgggacacaagataagctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagc 183  Q
    ||||||| | |||||||||||| ||||||| | |||||| ||||||||  ||| |||||||   | |||||||||||||||    
T  35225239 atcatcttgaacacaagataagttacataccgagtatttggggacaaggcaagggtgtttaacttcccacgaatttcaagc 35225319  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 899552 - 899465
Alignment:
Q  98 catcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcga 185  Q
    |||||||||||| | |||||||||||||  |||||   |||||| |||||||| ||| |||||| ||| |||||||||||||||||||    
T  899552 catcaatcatcttgaacacaagataagccgcataccaagtattttgggacaaggaaaaagtgttaattattccacgaatttcaagcga 899465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 19246845 - 19246757
Alignment:
Q  97 gcatcaatcatctgggacacaagataagctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcga 185  Q
    |||||||| |||| | | || ||||||||| ||||||| |||||| |||||||| ||||||| || ||  | |||||||||||| ||||    
T  19246845 gcatcaattatcttgaagacgagataagctgcatactgagtatttggggacaaggaaagagtcttaataataccacgaatttcatgcga 19246757  T

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