View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_high_13 (Length: 219)
Name: NF6137_high_13
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 5809352 - 5809539
Alignment:
| Q |
17 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaact |
114 |
Q |
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| T |
5809352 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgtcgaggcgagaattattttatccaaact |
5809451 |
T |
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| Q |
115 |
accaaatttcccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttc |
202 |
Q |
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| T |
5809452 |
accaaatttccccaaaatctttgcaagttcattttcggtggcaccataaggcaagttctacgctaaaattacatggttacttcttttc |
5809539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 37754793 - 37754970
Alignment:
| Q |
27 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
123 |
Q |
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| T |
37754793 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37754891 |
T |
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| Q |
124 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttc |
202 |
Q |
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| T |
37754892 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttc |
37754970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 37760767 - 37760944
Alignment:
| Q |
27 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
123 |
Q |
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| T |
37760767 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37760865 |
T |
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| Q |
124 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttc |
202 |
Q |
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| T |
37760866 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttc |
37760944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 37738980 - 37739118
Alignment:
| Q |
66 |
aaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcaccataa |
163 |
Q |
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| T |
37738980 |
aaataccagggccaatgtttttgtcgagggcagaattattttatccaaactaccaaatttcccaaacatctttgcaagatcattttccgtagcaccatat |
37739079 |
T |
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| Q |
164 |
ggcaagttcttcgctaaaattacatggttacttcttttc |
202 |
Q |
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| T |
37739080 |
ggcaaatttttcgctaaaagtacatggttacttcttttc |
37739118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 38605875 - 38605734
Alignment:
| Q |
62 |
ggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcacc |
159 |
Q |
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|||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||| |
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| T |
38605875 |
ggaaaaataccagggccaatgttcttgtcgaggggagaattattttatccaaactaccaaatttcccaaacatctctgcaagttcattttccgtagcacc |
38605776 |
T |
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| Q |
160 |
ataaggcaagttcttcgctaaaattacatggttacttctttt |
201 |
Q |
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| T |
38605775 |
atatggcaaattttttgctaaaagtacatggttacttctttt |
38605734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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