View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6137_high_5 (Length: 377)

Name: NF6137_high_5
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6137_high_5
NF6137_high_5
[»] chr1 (3 HSPs)
chr1 (14-352)||(39210040-39210361)
chr1 (211-343)||(24036791-24036927)
chr1 (24-95)||(7673907-7673978)
[»] chr8 (3 HSPs)
chr8 (211-370)||(27513624-27513783)
chr8 (14-185)||(27510628-27510799)
chr8 (252-370)||(8675126-8675245)
[»] chr3 (1 HSPs)
chr3 (240-349)||(9461180-9461298)
[»] chr2 (2 HSPs)
chr2 (221-333)||(38950770-38950885)
chr2 (54-95)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (285-337)||(18331979-18332031)
chr6 (216-283)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (44-182)||(42091774-42091912)
chr4 (43-159)||(31949210-31949326)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 39210361 - 39210040
Alignment:
Q  14 tcatcaccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaa 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  39210361 tcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattctttaa 39210262  T
Q  114 aaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataat 213  Q
    ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  39210261 aaa-tgtccaaccgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataat 39210163  T
Q  214 atatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||| ||||||||||||||||||||||    
T  39210162 atatattctacactcacaacattggaatctaatctattcatattcaaattagttc----------------aaaaaaatcaacctcttcatcatcaggct 39210079  T
Q  314 tgcagatagtttcatcaacttcccttgtattttcaaggt 352  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39210078 tgcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 343
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  211 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 309  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  310 ----ggcttgcagatagtttcatcaacttcccttgtat 343  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
Q  24 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 95  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673907 gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 211 - 370
Target Start/End: Original strand, 27513624 - 27513783
Alignment:
Q  211 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 310  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  311 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcatctc 370  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctc 27513783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 27510628 - 27510799
Alignment:
Q  14 tcatcaccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattcttta 112  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||     
T  27510628 tcatctccatgtatattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattcttt- 27510726  T
Q  113 aaaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 185  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510727 aaaaatgtccaaccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 8675245 - 8675126
Alignment:
Q  252 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 350  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  351 gtcttcggcaccttcatctc 370  Q
    ||||||||||||||| ||||    
T  8675145 gtcttcggcaccttcttctc 8675126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
Q  240 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 330  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  331 acttcccttgtattttcaa 349  Q
    |||||| |  |||||||||    
T  9461198 acttccttcttattttcaa 9461180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  221 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 314  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  315 gcagatagtttcatcaact 333  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  54 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 95  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  285 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 337  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  216 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 283  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  44 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 142  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  143 ttctcgttcctctttttgacagccacctcaaactcattct 182  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 31949326 - 31949210
Alignment:
Q  43 cagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgtccaaccgtcggtaaaatagac 141  Q
    ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | | ||||  ||||| |||||||||||||| || |||||||| ||    
T  31949326 cagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatcccattaaagctcttt-aaaaatgtccaaccatcagtaaaataaac 31949228  T
Q  142 tttctcgttcctcttttt 159  Q
      || ||||| |||||||    
T  31949227 cctcccgttcttcttttt 31949210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University