View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_high_9 (Length: 304)
Name: NF6137_high_9
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6568916 - 6569201
Alignment:
| Q |
1 |
gaaaatgggcagctgaaatacgtgacccnnnnnnngcagctagagtttggttaggaacatttgatacagctgaagatgcagctcttgcatatgacaaagc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6568916 |
gaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgatacagctgaagatgcagctcttgcatatgacaaagc |
6569015 |
T |
|
| Q |
101 |
tgcactcaaattcaaaggcacaaaagctaagcttaatttccctgaaagagttgttcaatgcaacagttatagttctagtgctaataatgcaattcaacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6569016 |
tgcactcaaattcaaaggcacaaaagctaagcttaatttccctgaaagagttgttcaatgcaacagttatagttctactgctaataatgcaattcaacaa |
6569115 |
T |
|
| Q |
201 |
agtggttatgtttctaattctcatgatcaacaagttttcccaaacttgtttcagtatgctcagattctagaaagtgatgctgaatt |
286 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6569116 |
agtgattatgtttctaattctcatgatcaacaagttttcccaaacttgtttcagtatgctcagattctagaaagtgatgctgaatt |
6569201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6583075 - 6583360
Alignment:
| Q |
1 |
gaaaatgggcagctgaaatacgtgacccnnnnnnngcagctagagtttggttaggaacatttgatacagctgaagatgcagctcttgcatatgacaaagc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6583075 |
gaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgacacagctgaagatgcagctcttgcatatgacaaagc |
6583174 |
T |
|
| Q |
101 |
tgcactcaaattcaaaggcacaaaagctaagcttaatttccctgaaagagttgttcaatgcaacagttatagttctagtgctaataatgcaattcaacaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6583175 |
tgcattcaaattcaaaggcacaaaagctaagcttaatttccctgaaagagttgttcaatgcaacagttatagttctagtgctaatagtgcaattcaacaa |
6583274 |
T |
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| Q |
201 |
agtggttatgtttctaattctcatgatcaacaagttttcccaaacttgtttcagtatgctcagattctagaaagtgatgctgaatt |
286 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6583275 |
agtggttctgtttctaattctcatgatcaacaagttttcccaaacttgtttcagtatgctcagattctagaaagtgatgctgaatt |
6583360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 3160285 - 3160319
Alignment:
| Q |
42 |
agagtttggttaggaacatttgatacagctgaaga |
76 |
Q |
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| T |
3160285 |
agagtttggttaggaacttttgatacagctgaaga |
3160319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 45013972 - 45013872
Alignment:
| Q |
52 |
taggaacatttgatacagctgaagatgcagctcttgcatatgacaaagctgcactcaaattcaaaggcacaaaagctaagcttaatttccctgaaagagt |
151 |
Q |
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||||||||||||| || ||||| | |||||| |||||||||| |||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||| |
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| T |
45013972 |
taggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctgaaagagt |
45013873 |
T |
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| Q |
152 |
t |
152 |
Q |
| |
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| |
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| T |
45013872 |
t |
45013872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 4038753 - 4038787
Alignment:
| Q |
42 |
agagtttggttaggaacatttgatacagctgaaga |
76 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |
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| T |
4038753 |
agagtttggttaggaacttttgatacagctgaaga |
4038787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 2428734 - 2428696
Alignment:
| Q |
45 |
gtttggttaggaacatttgatacagctgaagatgcagct |
83 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||| |
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| T |
2428734 |
gtttggttaggaacatttgagacagctgaagaagcagct |
2428696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 38653212 - 38653171
Alignment:
| Q |
42 |
agagtttggttaggaacatttgatacagctgaagatgcagct |
83 |
Q |
| |
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||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
38653212 |
agagtatggttaggtacatttgaaacagctgaagatgcagct |
38653171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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