View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_low_12 (Length: 296)
Name: NF6137_low_12
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 27514020 - 27513835
Alignment:
| Q |
27 |
aatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagt |
126 |
Q |
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| T |
27514020 |
aatgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagt |
27513921 |
T |
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| Q |
127 |
cgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
214 |
Q |
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| T |
27513920 |
cgaaagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
44 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
139 |
Q |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
140 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
190 |
Q |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 27513807 - 27513735
Alignment:
| Q |
224 |
atttctgtgttgttgtagcttccagagaagaaggtgccgacgaccttgcaaatacaagggaagttgatgaaac |
296 |
Q |
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| T |
27513807 |
atttctgtgttgtcgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaac |
27513735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 8675102 - 8675172
Alignment:
| Q |
224 |
atttctgtgttgttgtagcttccagagaagaaggtgccgacgac-cttgcaaatacaagggaagttgatga |
293 |
Q |
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| T |
8675102 |
atttctgtgttgttgtagcctccggagaagaaggtgccgaagacgattgagaatacaagggaagttgatga |
8675172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 39209906 - 39210040
Alignment:
| Q |
119 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttgannnn |
218 |
Q |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga--tt |
39210003 |
T |
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| Q |
219 |
nnnnnatttctgtgttgttgtagcttccagagaagaa |
255 |
Q |
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| T |
39210004 |
tttttatttctgtgttgttgtagcttccatagaagaa |
39210040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 39209834 - 39209911
Alignment:
| Q |
15 |
gacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
92 |
Q |
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| T |
39209834 |
gacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
47 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
142 |
Q |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
143 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
190 |
Q |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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