View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6137_low_14 (Length: 252)

Name: NF6137_low_14
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6137_low_14
NF6137_low_14
[»] chr2 (11 HSPs)
chr2 (39-145)||(29747125-29747231)
chr2 (50-123)||(31347405-31347478)
chr2 (50-143)||(38211339-38211432)
chr2 (57-125)||(18010909-18010977)
chr2 (38-122)||(33125407-33125490)
chr2 (59-145)||(31314645-31314731)
chr2 (61-138)||(17863231-17863308)
chr2 (37-143)||(24837182-24837287)
chr2 (38-108)||(33119191-33119260)
chr2 (2-37)||(29747073-29747108)
chr2 (72-145)||(29742295-29742368)
[»] chr3 (13 HSPs)
chr3 (43-143)||(2747075-2747175)
chr3 (63-145)||(14521647-14521729)
chr3 (59-145)||(18111091-18111177)
chr3 (59-144)||(37489374-37489459)
chr3 (65-145)||(19359868-19359948)
chr3 (59-138)||(5835276-5835355)
chr3 (59-146)||(19440715-19440802)
chr3 (57-143)||(7782831-7782917)
chr3 (49-145)||(27170115-27170211)
chr3 (59-123)||(28034338-28034402)
chr3 (59-109)||(5938385-5938435)
chr3 (57-138)||(12092504-12092585)
chr3 (59-145)||(8678161-8678247)
[»] chr4 (13 HSPs)
chr4 (38-145)||(1604698-1604804)
chr4 (59-145)||(1505339-1505425)
chr4 (59-145)||(2895143-2895229)
chr4 (59-145)||(5908497-5908583)
chr4 (63-145)||(5599255-5599337)
chr4 (59-145)||(13701957-13702043)
chr4 (59-145)||(13712450-13712536)
chr4 (59-143)||(4852040-4852124)
chr4 (63-143)||(24627362-24627442)
chr4 (37-112)||(3329495-3329569)
chr4 (39-122)||(20349574-20349657)
chr4 (63-109)||(7451215-7451261)
chr4 (63-116)||(6735770-6735823)
[»] chr6 (8 HSPs)
chr6 (59-145)||(5131338-5131424)
chr6 (59-123)||(31113651-31113715)
chr6 (65-145)||(34256191-34256271)
chr6 (63-138)||(33301133-33301208)
chr6 (59-109)||(6406206-6406256)
chr6 (63-145)||(28144393-28144475)
chr6 (63-145)||(8519281-8519363)
chr6 (59-123)||(14679568-14679632)
[»] chr7 (8 HSPs)
chr7 (43-140)||(3737866-3737963)
chr7 (63-145)||(19802252-19802334)
chr7 (59-145)||(42786501-42786587)
chr7 (59-145)||(48477399-48477485)
chr7 (49-129)||(20920353-20920433)
chr7 (63-143)||(21959210-21959290)
chr7 (59-145)||(3079026-3079112)
chr7 (64-145)||(4340549-4340630)
[»] chr1 (12 HSPs)
chr1 (59-145)||(15088261-15088347)
chr1 (59-145)||(22210869-22210955)
chr1 (59-117)||(22207306-22207364)
chr1 (59-145)||(22219619-22219705)
chr1 (38-144)||(14150122-14150227)
chr1 (59-123)||(7898990-7899054)
chr1 (57-128)||(7064027-7064098)
chr1 (59-145)||(44193460-44193546)
chr1 (57-126)||(1944780-1944849)
chr1 (59-138)||(1991596-1991675)
chr1 (59-143)||(14115544-14115628)
chr1 (65-128)||(51843949-51844012)
[»] chr8 (8 HSPs)
chr8 (59-145)||(20811018-20811104)
chr8 (43-129)||(25004005-25004091)
chr8 (60-145)||(4844422-4844507)
chr8 (65-145)||(5557130-5557210)
chr8 (50-144)||(24974950-24975044)
chr8 (59-143)||(25336125-25336209)
chr8 (59-138)||(3166428-3166507)
chr8 (68-137)||(9984482-9984551)
[»] chr5 (5 HSPs)
chr5 (65-145)||(41527884-41527964)
chr5 (59-138)||(26075646-26075725)
chr5 (57-143)||(21098954-21099040)
chr5 (68-145)||(23213637-23213715)
chr5 (63-115)||(19078726-19078778)
[»] scaffold0024 (1 HSPs)
scaffold0024 (59-138)||(63468-63547)
[»] scaffold0158 (2 HSPs)
scaffold0158 (63-129)||(5-71)
scaffold0158 (69-129)||(37461-37521)
[»] scaffold0060 (1 HSPs)
scaffold0060 (59-128)||(45204-45273)
[»] scaffold0046 (1 HSPs)
scaffold0046 (59-143)||(89840-89924)
[»] scaffold0043 (1 HSPs)
scaffold0043 (59-145)||(70126-70212)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 29747125 - 29747231
Alignment:
Q  39 tgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29747125 tgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtgagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 29747224  T
Q  139 accatct 145  Q
    |||||||    
T  29747225 accatct 29747231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 31347478 - 31347405
Alignment:
Q  50 aaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctc 123  Q
    |||||||  ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  31347478 aaataagtaaaaaggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctc 31347405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 38211339 - 38211432
Alignment:
Q  50 aaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    |||||| ||||| |||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| |||| |||||  |||||||| ||||    
T  38211339 aaataaaataaaaggattggggtgagacaggatctctcagtgagttccacctatcctaagttgtaggcaatcttggggagcctatgatcgccat 38211432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 18010909 - 18010977
Alignment:
Q  57 ataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcgg 125  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||| |||||||    
T  18010909 ataaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggctgcaggcaatctcgg 18010977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 33125490 - 33125407
Alignment:
Q  38 ctgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatct 122  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||||||| ||| |||||||| ||||||||  ||||||||||||    
T  33125490 ctgcttatct-aaaataaaataaagggattggggtgagacatgatgtcttagtgagttccacctatcctagactgtaggcgatct 33125407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 31314645 - 31314731
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||| ||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| ||| |||| ||||||    
T  31314645 aaagagatcggggtgagacatgatgtttcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatct 31314731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 17863231 - 17863308
Alignment:
Q  61 agggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    ||||| |||||||||||| ||||||||||| |||||||| ||| ||||||| || || ||||||||||| ||||||||    
T  17863231 agggactggggtgagacatgatgtctcagtgagttccacctattctaggttatatgcaatctcggggaacctatgatc 17863308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 24837182 - 24837287
Alignment:
Q  37 tctgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatga 136  Q
    ||||||||| ||||||||| |||||||||||| ||||||||| |||| |||||| |||||| | |||| |||| |||| |  |||| |||||| ||||||    
T  24837182 tctgcttatttgaaaataa-ataaagggattgaggtgagacatgatggctcagtgagttccgcctatcttaggatgtaagaaatcttggggaacctatga 24837280  T
Q  137 tcaccat 143  Q
    || ||||    
T  24837281 tcgccat 24837287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 33119260 - 33119191
Alignment:
Q  38 ctgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctag 108  Q
    |||||||||| ||||| | |||||||||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  33119260 ctgcttatct-aaaatgaaataaagggattggggtgagacatgatgtcttagtgagttccacttatcctag 33119191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 29747073 - 29747108
Alignment:
Q  2 ccggcttccttctgttgatatctggcatgaaccttt 37  Q
    ||||||||||||||||||||||||||||||||||||    
T  29747073 ccggcttccttctgttgatatctggcatgaaccttt 29747108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 29742295 - 29742368
Alignment:
Q  72 tgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||| |||| ||||||| |||||||| |||  |||||||||||| ||||| ||||| |||||||| ||||||    
T  29742295 tgagacgggatatctcagtgagttccacctattttaggttgtaggcaatctcagggaacctatgatcgccatct 29742368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 2747175 - 2747075
Alignment:
Q  43 tatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcacca 142  Q
    |||||||||||||   |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| |||| |||    
T  2747175 tatctgaaaataaataaaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgcca 2747076  T
Q  143 t 143  Q
    |    
T  2747075 t 2747075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 14521729 - 14521647
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||||||||||  |||||| ||| |||||||| ||||||||| ||||||| ||||||||||||||| |||| ||||||    
T  14521729 ggattggggtgagacaaaatgtcttagtgagttccacctatcctaggctgtaggcaatctcggggaatctaagatcgccatct 14521647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 18111091 - 18111177
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||| || || ||||| ||| |||| ||||||    
T  18111091 aaagggatcggggtgagacatgatgtctcagtgagttccacctatcctaggttgtaggcaatatcagggaacctaggatcgccatct 18111177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 37489374 - 37489459
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatc 144  Q
    |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| ||||| || || ||| |||| |||||    
T  37489374 aaagggattggggtgagacaagatgtctcggtgagttccacctatcctaggttgtaggcaatctcaggaaacctaggatcgccatc 37489459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 19359948 - 19359868
Alignment:
Q  65 attggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||||||||  |||||||||| |||||||| ||||||||| ||||||| ||||||||||| ||| |||| ||||||    
T  19359948 attggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccatct 19359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 5835276 - 5835355
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||||||| | ||||| ||||| ||||| ||| ||||    
T  5835276 aaagggattggggtgagataggatgtctcagtgagttccacctatcctaggctataggcaatctcagggaacctaggatc 5835355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 19440715 - 19440802
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatctt 146  Q
    |||||||||| ||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||  |||| ||| |||| |||||||    
T  19440715 aaagggattgaggtgagacatgatgtctcagtgagttccacctatcctaggctgtaggcaatctcaaggaacctaggatcgccatctt 19440802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 7782831 - 7782917
Alignment:
Q  57 ataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    ||||| ||||| |||||||||| ||||||| ||| |||||||| ||||||| | | ||||| ||||||||||| |||||||||||||    
T  7782831 ataaatggattagggtgagacacgatgtcttagtgagttccacctatcctaagctataggcaatctcggggaacctatgatcaccat 7782917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 27170115 - 27170211
Alignment:
Q  49 aaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||| |||||  ||||| ||||||||| ||||||||||| |||||||  |||| ||||||| |||| |||||  |||| |||||||||||||||    
T  27170115 aaaataaaataaaatgattgaggtgagacatgatgtctcagtgagttccatctatcataggttgaaggcaatctctaggaacctatgatcaccatct 27170211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 28034338 - 28034402
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctc 123  Q
    |||||||||||||||||||| ||||||||||| | |||||| ||||||||||||| ||| |||||    
T  28034338 aaagggattggggtgagacaagatgtctcagtgaattccacctatcctaggttgttggcaatctc 28034402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 5938385 - 5938435
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctagg 109  Q
    |||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  5938385 aaagggattggggtgagataggatgtctcagtgagttccacctatcctagg 5938435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 12092585 - 12092504
Alignment:
Q  57 ataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    ||||||||| |||| ||||||||||| ||||||| | |||||| |||  |||||||||||| |||||  |||||||||||||    
T  12092585 ataaagggaatgggatgagacaggatatctcagtgaattccacctattttaggttgtaggcaatctcatggaatctatgatc 12092504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 8678161 - 8678247
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||| |||||||||||| ||| ||||||||| ||| |||| ||||||||| | |||   ||||||| ||| |||||||| ||||||    
T  8678161 aaaggaattggggtgagataggttgtctcagtgagtcccacttatcctaggctatagataatctcggagaaactatgatcgccatct 8678247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 1604804 - 1604698
Alignment:
Q  38 ctgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgat 137  Q
    ||||| |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||  || ||||| |||| ||    
T  1604804 ctgctcatctgaaaataa-ataaagggattggggtgagacaggaggtctcagtgagttccacctatcctaggttgtaggcgacttcagggaacctataat 1604706  T
Q  138 caccatct 145  Q
    | ||||||    
T  1604705 cgccatct 1604698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 1505339 - 1505425
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||| ||||| ||| |||| ||||||    
T  1505339 aaagggattggggtgagacaagatgtcttagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatct 1505425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 2895229 - 2895143
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| | ||||||||| ||| |||| ||||||    
T  2895229 aaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatct 2895143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 5908497 - 5908583
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| | ||||||||| ||| |||| ||||||    
T  5908497 aaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatct 5908583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 5599255 - 5599337
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||| ||||||||||| |||||||  ||||||||||||||||| | ||| ||||| ||| |||| ||||||    
T  5599255 ggattggggtgagacaagatgtctcagtgagttccatctatcctaggttgtaggcaacctcagggaacctaggatccccatct 5599337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 13701957 - 13702043
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||| | ||||||||||| |||||||| |||||||||||||| || ||||| || || ||| |||| ||||||    
T  13701957 aaagggattggggtgagataagatgtctcagtgagttccacctatcctaggttgtacgcaatctcaggaaacctacgatcgccatct 13702043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 13712450 - 13712536
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||| | ||||||||||| |||||||| |||||||||||||| || ||||| || || ||| |||| ||||||    
T  13712450 aaagggattggggtgagataagatgtctcagtgagttccacctatcctaggttgtacgcaatctcaggaaacctacgatcgccatct 13712536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 4852040 - 4852124
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    |||||||||||| ||||||| ||||| ||| | |||||||| ||||||||||||||||| | ||||||||| ||| |||| ||||    
T  4852040 aaagggattgggatgagacaagatgtttcactgagttccacctatcctaggttgtaggcaacctcggggaacctaggatcgccat 4852124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 24627362 - 24627442
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    |||||||||||| ||| ||||||||||  |||||||| ||||||||| ||||||| ||||| ||||| |||||||| ||||    
T  24627362 ggattggggtgacacatgatgtctcagcgagttccacctatcctaggatgtaggcaatctcagggaacctatgatcgccat 24627442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 3329569 - 3329495
Alignment:
Q  37 tctgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttg 112  Q
    |||||||||||||||  ||| |||| |||||||||||||||| ||||||||||| |||||||| |||| |||||||    
T  3329569 tctgcttatctgaaataaag-taaaaggattggggtgagacaagatgtctcagtgagttccacctatcttaggttg 3329495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 20349657 - 20349574
Alignment:
Q  39 tgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatct 122  Q
    |||||| ||||||  || ||||| | |||||| ||||||| ||||||||||| |||||||| ||| ||||| ||||||| ||||    
T  20349657 tgcttaactgaaataaaaataaaagaattgggatgagacaagatgtctcagtgagttccacctatactaggctgtaggcaatct 20349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 7451215 - 7451261
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctagg 109  Q
    ||||||||||||||||  | ||||||||||||||||| |||||||||    
T  7451215 ggattggggtgagacataaggtctcagtaagttccacctatcctagg 7451261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 6735823 - 6735770
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtagg 116  Q
    |||||||| ||||||| ||||||||||| |||||||| ||||||| | ||||||    
T  6735823 ggattgggatgagacatgatgtctcagtgagttccacctatcctaagctgtagg 6735770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 5131424 - 5131338
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||| |||| ||||||    
T  5131424 aaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggttgtaggcaatctcggggaacctaggatcgccatct 5131338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 31113715 - 31113651
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctc 123  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||    
T  31113715 aaagggattggggtgagacatgatgtctcagtgagttccacctatcctaggctgtaggcaatctc 31113651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 34256271 - 34256191
Alignment:
Q  65 attggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||||||||  ||| |||||| |||||||| ||||||||| ||||||| ||||||||||||||| |||| ||||||    
T  34256271 attggggtgagacaaaatgcctcagtgagttccacctatcctaggctgtaggcaatctcggggaatctaggatcgccatct 34256191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 33301208 - 33301133
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    |||||||||||||||| ||||||||||| |||||||  ||||||||||||||||| | || |||||| ||| ||||    
T  33301208 ggattggggtgagacaagatgtctcagtgagttccatctatcctaggttgtaggcaacctgggggaacctaggatc 33301133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 6406206 - 6406256
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctagg 109  Q
    |||||||||||||||||||| ||||||||||| |||| ||| |||||||||    
T  6406206 aaagggattggggtgagacatgatgtctcagtgagttgcacctatcctagg 6406256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 28144393 - 28144475
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||| |||||||  |||||||||| |||||||| ||| ||||  ||||||| ||||||||||| ||| |||| ||||||    
T  28144393 ggattgggctgagacaaaatgtctcagtgagttccacctatactagactgtaggcaatctcggggaacctaggatcgccatct 28144475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 8519281 - 8519363
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||| |||||||||  |||||| ||| |||| ||| |||| |||||||||||| |||||  |||| ||| |||||||||||    
T  8519281 ggattgaggtgagacaaaatgtctaagtgagtttcacctatcttaggttgtaggcaatctctaggaacctaggatcaccatct 8519363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 14679568 - 14679632
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctc 123  Q
    ||||| |||| |||| |||||||||||| ||| |||| ||| ||||||| ||||||||| |||||    
T  14679568 aaaggtattgaggtgtgacaggatgtcttagtgagtttcacttatcctatgttgtaggcaatctc 14679632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 3737963 - 3737866
Alignment:
Q  43 tatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcac 140  Q
    |||||||||  || |||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||  |||||||||    
T  3737963 tatctgaaataaaaataaagggattggggtgagacatgatgtctcagtgagttccacctattctaggttgtaggcgatctcagggaacatatgatcac 3737866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 19802252 - 19802334
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||||||||||  |||||||||| |||||||| ||||||||| ||||||| ||||||||||| ||| |||| ||||||    
T  19802252 ggattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctacgatcgccatct 19802334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 42786587 - 42786501
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| | ||||||||| ||| |||| ||||||    
T  42786587 aaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatct 42786501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 48477399 - 48477485
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| | ||||||||| ||| |||| ||||||    
T  48477399 aaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatct 48477485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 20920433 - 20920353
Alignment:
Q  49 aaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaa 129  Q
    ||||||| || || |||||||| |||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  20920433 aaaataaaatgaaaggattgggatgaggcatgatgtctcagtgagttccacctatcctaggttgtaggcaatctcggggaa 20920353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 21959290 - 21959210
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    ||||||||||||||||  |||||||||| |||||||| ||||||||| ||||||| ||||||||||| ||| |||| ||||    
T  21959290 ggattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccat 21959210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 3079112 - 3079026
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||| ||||||||||||||||| | |||||||| |||||||||| |||||  ||| | ||||| ||| |||| ||||||    
T  3079112 aaagggattgggctgagacaggatgtctcaatgagttccacctatcctaggtagtaggaaatcgcagggaacctaggatcgccatct 3079026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 4340549 - 4340630
Alignment:
Q  64 gattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||  |||||||||| |||||||| ||||||||| ||||||| | |||||| || ||| ||||| |||||    
T  4340549 gattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaacctcgggaaacctaggatcatcatct 4340630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 15088261 - 15088347
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| | ||||| ||| |||| ||||||    
T  15088261 aaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatcgcagggaacctaggatcgccatct 15088347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 22210869 - 22210955
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| | ||||| ||| |||| ||||||    
T  22210869 aaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatcgcagggaacctaggatcgccatct 22210955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 22207306 - 22207364
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggc 117  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  22207306 aaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggc 22207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 22219619 - 22219705
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||| | ||||| ||| |||| ||||||    
T  22219619 aaagggattggggtgagacaggatgtctcagtgagttgcacctatcctaggttgtaggcaatcgcagggaacctaggatcgccatct 22219705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 14150227 - 14150122
Alignment:
Q  38 ctgcttatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgat 137  Q
    |||||||||||||| ||| ||||| |||||||||||||||| |||||||| || |||||||| |||||||   ||||||| ||||||||||| |||| ||    
T  14150227 ctgcttatctgaaa-taaaataaaaggattggggtgagacatgatgtctcggtgagttccacctatcctaaactgtaggcaatctcggggaacctataat 14150129  T
Q  138 caccatc 144  Q
    | |||||    
T  14150128 cgccatc 14150122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 7898990 - 7899054
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctc 123  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |||||    
T  7898990 aaagggattggggtgagacaagatgtctcagtgagttccacctatcctagattgtaggcaatctc 7899054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 7064027 - 7064098
Alignment:
Q  57 ataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcgggga 128  Q
    ||||| ||||| ||||||||||  |||||||||| |||||||| ||||||||||||||||| |||| |||||    
T  7064027 ataaaaggattagggtgagacataatgtctcagtgagttccacctatcctaggttgtaggcaatcttgggga 7064098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 44193546 - 44193460
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||   ||||||| || |||||||| ||||||||||||||||| |||||  |||| ||| |||| ||||||    
T  44193546 aaagggattggggtgagacgaaatgtctcggtgagttccacctatcctaggttgtaggcaatctcaaggaacctaggatcgccatct 44193460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 1944849 - 1944780
Alignment:
Q  57 ataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggg 126  Q
    |||||| |||||||||||||| |||||||| ||| |||||||| | ||||||||||||||| || |||||    
T  1944849 ataaagcgattggggtgagaccggatgtcttagtgagttccacctttcctaggttgtaggcaatatcggg 1944780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 1991675 - 1991596
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    ||||||||||||||||  || ||||||||||| |||||||| |||| || |||||| || |||||||| || ||||||||    
T  1991675 aaagggattggggtgacgcatgatgtctcagtgagttccacctatcataagttgtacgcaatctcgggaaacctatgatc 1991596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 14115628 - 14115544
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    |||||||||||||||||||| ||||||||||   ||||||| ||||||||| || | || | |||||| || |||||||| ||||    
T  14115628 aaagggattggggtgagacaagatgtctcagcgcgttccacctatcctaggctgcaagcaacctcgggaaacctatgatcgccat 14115544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 51843949 - 51844012
Alignment:
Q  65 attggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcgggga 128  Q
    |||||||||||||| ||||||||||| |||||||| |||| || | ||||||| ||||| ||||    
T  51843949 attggggtgagacatgatgtctcagtgagttccacctatcttaaggtgtaggcaatctcaggga 51844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 20811104 - 20811018
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| | ||| ||| |||| ||||||    
T  20811104 aaagggattggggtgagacagaatgtctcagtgagttccacctatcctaggttgtaggcaatctcagtgaacctaggatcgccatct 20811018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 25004091 - 25004005
Alignment:
Q  43 tatctgaaaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaa 129  Q
    |||||||||  || ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||| ||||| |||||    
T  25004091 tatctgaaataaaaataaagggattggggtgagacagaatgtctcagtgagttccacctatcctaggctgtaggcaatctcagggaa 25004005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 4844507 - 4844422
Alignment:
Q  60 aagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    |||||||||||||||||||||||| | |||| |||||||| ||||||||||||||||| ||||| ||||| ||| |||| ||||||    
T  4844507 aagggattggggtgagacaggatgccgcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatct 4844422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 5557130 - 5557210
Alignment:
Q  65 attggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||||||||  |||||||||| |||||||| ||||||||| ||||||| ||||||||||| ||| |||| ||||||    
T  5557130 attggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccatct 5557210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 24975044 - 24974950
Alignment:
Q  50 aaataagataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatc 144  Q
    |||||| ||||||| | |||||||||||||||| ||||||| ||||||||||||||||   |||| |  ||||||| |||||||||||| |||||    
T  24975044 aaataaaataaaggaaatggggtgagacaggatatctcagtgagttccacatatcctaaaatgtatgaaatctcggagaatctatgatcgccatc 24974950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 25336125 - 25336209
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    ||||| ||||||||||||||||||||| |||| |||||||| ||||||||| | ||||| ||||| ||||| ||| |||| ||||    
T  25336125 aaaggaattggggtgagacaggatgtcccagtgagttccacctatcctaggctataggcaatctcagggaacctaggatcgccat 25336209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 3166507 - 3166428
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    |||| ||||||||||||||| ||||||||  | |||||||  ||||||||||||||||| ||||| ||||| ||| ||||    
T  3166507 aaagtgattggggtgagacatgatgtctcgatgagttccatctatcctaggttgtaggcaatctcagggaacctaggatc 3166428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 9984551 - 9984482
Alignment:
Q  68 ggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgat 137  Q
    |||||||||||| || ||||| | |||||||| ||||||||| ||||| | |||||  ||||||||||||    
T  9984551 ggggtgagacagaatatctcaatgagttccacctatcctaggctgtagacaatctcaaggaatctatgat 9984482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 41527884 - 41527964
Alignment:
Q  65 attggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||||||||  |||||||||| |||||||| ||||||||| ||||||| ||||||||||| ||| |||| ||||||    
T  41527884 attggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccatct 41527964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 26075725 - 26075646
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    |||||||||||||||||||||||||| ||||| ||||||||  |||||| ||||||||| ||||||| ||| ||| ||||    
T  26075725 aaagggattggggtgagacaggatgtatcagtgagttccaccaatcctatgttgtaggcaatctcggagaacctaggatc 26075646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 21098954 - 21099040
Alignment:
Q  57 ataaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    ||||| |||||| | |||||||| |||| ||||| |||||||| ||||||||| ||| ||| ||| |||||||||||||||| ||||    
T  21098954 ataaaaggattgagatgagacagaatgtttcagtgagttccacctatcctaggctgtgggcaatcgcggggaatctatgatcgccat 21099040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 23213637 - 23213715
Alignment:
Q  68 ggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcgggg-aatctatgatcaccatct 145  Q
    |||||||||||  |||||| ||| |||||||| ||||||||||| ||||| ||||||||| || |||||||| ||||||    
T  23213637 ggggtgagacattatgtcttagtgagttccacctatcctaggttttaggcaatctcggggaaacctatgatcgccatct 23213715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 19078778 - 19078726
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtag 115  Q
    |||||||| |||||| |||||||||||| |||||||| ||||||||| |||||    
T  19078778 ggattgggatgagacgggatgtctcagtgagttccacctatcctaggctgtag 19078726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 63468 - 63547
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatc 138  Q
    |||| |||||||||| |||||||||||||||| |||||||| ||||||| |||||| || ||||||||||| ||| ||||    
T  63468 aaagagattggggtgtgacaggatgtctcagtgagttccacctatcctaagttgtatgctatctcggggaacctacgatc 63547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 71 - 5
Alignment:
Q  63 ggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaa 129  Q
    ||||||||||||||||  |||||||||| |||||||| ||||||||| ||||||| |||||||||||    
T  71 ggattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaa 5  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 37521 - 37461
Alignment:
Q  69 gggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaa 129  Q
    ||||||||||  |||||||| | |||||||| ||||||||| ||||| | |||||||||||    
T  37521 gggtgagacaaaatgtctcatttagttccacctatcctaggctgtagacaatctcggggaa 37461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 45273 - 45204
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcgggga 128  Q
    ||||||||||||||||||||  |||||| ||| ||||||||||| |||||||||||||| ||||| ||||    
T  45273 aaagggattggggtgagacaaaatgtcttagtgagttccacataccctaggttgtaggcaatctcaggga 45204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 89840 - 89924
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 143  Q
    ||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||| ||| | ||||| ||| |||| ||||    
T  89840 aaagggattggagtgagacaagatgtctcagtgagttccacctatcctaggctgtaggcaatcacagggaacctaggatcgccat 89924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 70212 - 70126
Alignment:
Q  59 aaagggattggggtgagacaggatgtctcagtaagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccatct 145  Q
    ||||||||| |||||||||| ||||||||||| |||||||| ||||||||| || |||| ||||| ||| | ||| ||||| |||||    
T  70212 aaagggattcgggtgagacaagatgtctcagtgagttccacctatcctaggatgcaggcaatctcagggtacctaggatcaacatct 70126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University