View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_low_15 (Length: 251)
Name: NF6137_low_15
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_low_15 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10736753 - 10736513
Alignment:
| Q |
1 |
cacaacaacaaataaccccaattgagtttctctccttcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatcccaaatca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10736753 |
cacagcaacaaataaccccaattgagtttctctccttcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatcccaaatca |
10736654 |
T |
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| Q |
101 |
atacatttttctcacaaatatccaaatagccagcaacatccccaaatcaacaaatacccataatcaattaaacagtaacaaaaaataaacagacaaacac |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
10736653 |
atacatttttctcacaaatatccaaatagtcagcaacatccccaaatcaacaaatacccataatcaattaaacaccaacaaaaaataaacaaacaaacac |
10736554 |
T |
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| Q |
201 |
gatcaacaacagaagagaaattagcagcttttagattcttc |
241 |
Q |
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| T |
10736553 |
gatcaacaacagaagagaaattagcagcttttagattcttc |
10736513 |
T |
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Target: scaffold0219 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 7236 - 7351
Alignment:
| Q |
37 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacat-cccaaatcaatacatttttctcacaaatatccaaatagccagca |
135 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| || |
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| T |
7236 |
tcccttcctgcatcatcattctcttttctcccttccttcaataacacaacaatatccccaaatcaatacccttttttcacaaatacccaaatagcca-ca |
7334 |
T |
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| Q |
136 |
acatccccaaatcaaca |
152 |
Q |
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| T |
7335 |
acacccccaaatcaaca |
7351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 40110427 - 40110370
Alignment:
| Q |
37 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
94 |
Q |
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| T |
40110427 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacagcaacatccc |
40110370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 26802998 - 26802914
Alignment:
| Q |
37 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacat-cccaaatcaatacatttttctcacaaata |
120 |
Q |
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| T |
26802998 |
tccctttctgcatcatcattctcttttctcccttcctgcaacaacacagcaacatccccatatcaatactcttttttcacaaata |
26802914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 24516667 - 24516724
Alignment:
| Q |
37 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
94 |
Q |
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| T |
24516667 |
tcccttcctgcatcatcgttctcttttctcccttcctgcaacaacacaacaacatccc |
24516724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 22620916 - 22620859
Alignment:
| Q |
37 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
94 |
Q |
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| T |
22620916 |
tcccttcctgcataatcattctcttttctcccttcctgcaacaacacagcaacatccc |
22620859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 41348584 - 41348637
Alignment:
| Q |
41 |
ttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
94 |
Q |
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| T |
41348584 |
ttcctgcatcatcattctcttttctcccttcctgcaacaacacaacaacatccc |
41348637 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 11968256 - 11968160
Alignment:
| Q |
55 |
ttctcttttctcccttcctgcaacaacacaccaacatcc-caaatcaatacatttttctcacaaatatccaaatagccagcaacatccccaaatcaa |
150 |
Q |
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|||||| |||||||||||| |||||||||| |||||||| ||||||||||| |||| ||||||||| |||||| ||||||| | |||||||||| |
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| T |
11968256 |
ttctctcttctcccttcctacaacaacacaacaacatcctcaaatcaatacccttttttcacaaatactcaaataaccagcaaaaatcccaaatcaa |
11968160 |
T |
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