View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_low_16 (Length: 242)
Name: NF6137_low_16
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38272684 - 38272442
Alignment:
| Q |
1 |
atcttataaaaagctacaacaattcagacaaattcaccgtgataacaaacattcacacacaaacacaaatcatataagaatttgagttaaataattaaca |
100 |
Q |
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| T |
38272684 |
atcttataaaaagctacaacaattcagacaaattcaccgtgataacaaacattcacacacaaacacaaatcatataagaatttgagttaaataattaaca |
38272585 |
T |
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| Q |
101 |
atgggtcccacctagatcaaacttttcatgttg-nnnnnnnnnntctactaaataaaatggccaagtcccaaaaaccatcggtgcaataatatattcatt |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38272584 |
atgggtcccacctagatcaaacttttcatgttgaaaaaaaaaaatctactaaataaaatggccaagtcccaaaaaccatcggtgcaataatatattcatt |
38272485 |
T |
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| Q |
200 |
catttttctccttttatcactcctgtctttctccctctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38272484 |
catttttctccttttatcactcctgtctttctccctctctgct |
38272442 |
T |
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