View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_low_2 (Length: 588)
Name: NF6137_low_2
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Complemental strand, 19344991 - 19344497
Alignment:
| Q |
18 |
tcaaagtagtgttgagttactgtgcttacttatagatctcctggctgcacaaaaccttcataaaatttgcaaccataggctcaagtttacagtgtgtcgc |
117 |
Q |
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| T |
19344991 |
tcaaagtagttttgagttactgtgcttacttatagatctcctggctgcacaaaaccttcataaaatttgcaaccataggctcaagtttacagtgtgtcgc |
19344892 |
T |
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| Q |
118 |
tgctatccccagctgtcgaagacctaatgccccgtgtctaacttcaactccatcatcctattcaatgccataatgctatatatgtttaaccaaaaacagg |
217 |
Q |
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| T |
19344891 |
tgctatccccagctgccgaagacctaatgccccgtgtctaacttcaactccatcatcctattcaatgccataatgctatatatgtttaaccaaaaacagg |
19344792 |
T |
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| Q |
218 |
agtgataaatcatcatttatgggaagtaatatatatgtaccatgtcaatggggtaaaacttcagtggtttcttttgaaatttcttatctctttcccatga |
317 |
Q |
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| T |
19344791 |
agtgataaatcatcaattatgggaagtaatatatatgtaccatgtcaatggggtaaaacttcagtggtttcttttgaaatttcttctctctttcccatga |
19344692 |
T |
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| Q |
318 |
ttcaaactcatttcctgttatttcctcaaagagcctcacaaactctttgatagcattgtccacattctcgcactcttctagtcgctcctccgcgtttgga |
417 |
Q |
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| T |
19344691 |
ttcaaactcatttcctgttatttcctcaaagagcctcacaaactctttgatagcattgtccacattctcgcactcttctagtcgctcctccgcgcttgga |
19344592 |
T |
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| Q |
418 |
tcgtcccccactcttcctttcttgaaatacaaatgcaaagaattctctgggacgacaatcagttgcatgacacagtagctgccacaaagtaacaa |
512 |
Q |
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| T |
19344591 |
tcgtcccccactcttcctttcttgaaatacaaatgcaaagaattctctgggacgacaatcagttgcatgacacagtagctgccccaaattaacaa |
19344497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 511 - 584
Target Start/End: Complemental strand, 19344469 - 19344396
Alignment:
| Q |
511 |
aatgtcaataaggttgtaaccaaaaaataaatgtcaataaggactaaatctgcaattgatcttgttagtattat |
584 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19344469 |
aatgtcaataaggttgtaaccaaaaaacaaatgtcaataaggactaaagctgcaattgatcttgttagtattat |
19344396 |
T |
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