View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_low_4 (Length: 451)
Name: NF6137_low_4
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 6463449 - 6463629
Alignment:
| Q |
16 |
taataatggaacttaactcaccacaagaaaatatcaaaatggtggtagaaaaatagacataacttaactatcaagattacttaattactcaagataaaag |
115 |
Q |
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| T |
6463449 |
taataatgaaacttaactcaccacaagaaaatatcaaaatggtggtagaaaaatagacataacttagctatcgagattacttaattactcaagataaaag |
6463548 |
T |
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| Q |
116 |
caaatatagcaatttgtaaaggtctaaagcaaa--tactccaagtgtgtgcgtatatattaccttgaaaactcttatgatt |
194 |
Q |
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| T |
6463549 |
caaatatagcaatttgtaaaggtccaaagcaaatgtactccaagtgtgtgcgtatatattaccttgaaaattcttatgatt |
6463629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 6463690 - 6463763
Alignment:
| Q |
254 |
ttgagataaaattgtagtctcttatttcaagcaggtggtatacaaccaatcatataacaccatccgaaaaggat |
327 |
Q |
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| T |
6463690 |
ttgagataaaattgtcgtctcttatttcaagcaggtggtatacaaccaatcatataacaccatccgaaaaggat |
6463763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 6452952 - 6453023
Alignment:
| Q |
258 |
gataaaattgtagtctc--ttatttcaagcaggtggtatacaaccaatcatataacaccatccgaaaaggat |
327 |
Q |
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| T |
6452952 |
gataaaattgtagtctctcttatttcaagcaggtggtatacaaccaatcatataacaccatccgaaaaggat |
6453023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 6463834 - 6463877
Alignment:
| Q |
398 |
gttgtaatagctacttaagagagctccccactacatagattcat |
441 |
Q |
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| T |
6463834 |
gttgtaatagctacttaagagagctccccaccacatagattcat |
6463877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 6452871 - 6452917
Alignment:
| Q |
148 |
atactccaagtgtgtgcgtatatattaccttgaaaactcttatgatt |
194 |
Q |
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| T |
6452871 |
atactccaagtgtgtgcgtgtatattaccttgaaaattcttatgatt |
6452917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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