View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6137_low_5 (Length: 380)
Name: NF6137_low_5
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6137_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 25953378 - 25953026
Alignment:
| Q |
17 |
agttcctacttttcatcctttgttcaaatacaacagaattcatactcatcatcataacaccttctcattcaccatcagctgcaacctcaaaaacaaggga |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25953378 |
agttcccacttttcatcctttgttcaaatacaacagaattcatagtcatcgtcataacaccttctcattcaccatcagctgcaacctcaaaaacaaggga |
25953279 |
T |
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| Q |
117 |
aagaataatagcttgttgtcacagaagattgttttatcagaatcttctcctccaccactcacacaggataatgatgatatcaacaatggaaatgttccag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25953278 |
aagaataatagcttgttgtcacagaagattgttttatcagaatcttctcctccaccactcacacaggataatgatgatatcaacaatggaaatgttccag |
25953179 |
T |
|
| Q |
217 |
caagctcaaagaaccagaaaggtccttctggtgtggtcaaaaagttgagtaaaaaggtgttgcagattctctctaatttgcctttggctattggagaaat |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25953178 |
caagctcaaagaaccagaaaggtccttatggtgtggtcaaaaagttgagtaaaaaggtgttgcagattctctctaatttgcctttggctattggagaaat |
25953079 |
T |
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| Q |
317 |
gttcatcattgcttttttaatgggtttaggtatgtgcttaatattttcttctt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25953078 |
gttcatcattgcttttttaatgggtttaggtatgtgcttaatattttcttctt |
25953026 |
T |
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