View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6137_low_7 (Length: 351)

Name: NF6137_low_7
Description: NF6137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6137_low_7
NF6137_low_7
[»] scaffold0009 (1 HSPs)
scaffold0009 (23-351)||(200042-200362)
[»] chr4 (11 HSPs)
chr4 (23-351)||(28948426-28948746)
chr4 (23-351)||(22703070-22703381)
chr4 (23-351)||(22990736-22991047)
chr4 (224-346)||(22698733-22698848)
chr4 (224-346)||(22981682-22981797)
chr4 (224-346)||(22995269-22995384)
chr4 (220-303)||(56560508-56560591)
chr4 (220-303)||(24036214-24036297)
chr4 (220-304)||(16565539-16565623)
chr4 (220-304)||(15618844-15618928)
chr4 (254-299)||(52056997-52057042)
[»] chr8 (6 HSPs)
chr8 (224-346)||(19648194-19648309)
chr8 (220-303)||(193387-193470)
chr8 (220-303)||(720991-721074)
chr8 (220-303)||(882098-882181)
chr8 (220-303)||(30983223-30983306)
chr8 (220-303)||(44240122-44240205)
[»] chr1 (6 HSPs)
chr1 (224-346)||(4345989-4346104)
chr1 (220-303)||(46407488-46407571)
chr1 (220-303)||(50978939-50979022)
chr1 (227-303)||(35606336-35606412)
chr1 (220-304)||(35569906-35569990)
chr1 (262-302)||(50979027-50979067)
[»] chr5 (5 HSPs)
chr5 (224-346)||(22809984-22810099)
chr5 (220-303)||(33232457-33232540)
chr5 (220-303)||(7072032-7072115)
chr5 (220-304)||(22481515-22481599)
chr5 (117-163)||(22808657-22808703)
[»] chr3 (4 HSPs)
chr3 (224-342)||(7011653-7011764)
chr3 (220-303)||(51125383-51125466)
chr3 (220-303)||(52692542-52692625)
chr3 (247-304)||(16246819-16246876)
[»] chr2 (6 HSPs)
chr2 (224-346)||(23360942-23361058)
chr2 (220-303)||(13895999-13896082)
chr2 (220-303)||(14036616-14036699)
chr2 (220-303)||(14380107-14380190)
chr2 (220-304)||(5916944-5917028)
chr2 (220-304)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (220-303)||(21515703-21515786)
chr6 (220-303)||(30019220-30019303)
chr6 (220-304)||(16547456-16547540)
chr6 (227-305)||(17830767-17830845)
[»] chr7 (3 HSPs)
chr7 (220-305)||(37638703-37638788)
chr7 (220-305)||(10372714-10372799)
chr7 (259-304)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (227-298)||(6607-6678)


Alignment Details
Target: scaffold0009 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 200362 - 200042
Alignment:
Q  23 acctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaa 122  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||        |||||||    
T  200362 acctgctacggctgggggtagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctagactttctaggcttttttt-atgttaa 200264  T
Q  123 ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  200263 ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataa 200164  T
Q  223 tgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 322  Q
    ||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  200163 tgaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcat 200071  T
Q  323 gcctaaattcacaattaagacacaggttc 351  Q
    ||||||||||||||||| |||||||||||    
T  200070 gcctaaattcacaattatgacacaggttc 200042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 28948746 - 28948426
Alignment:
Q  23 acctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaa 122  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||         |||||||    
T  28948746 acctgctacggttgggggtagttttttggccaagggcctggttggttttgtttgtctctgtaattgctttctagactttctagg-atttttttatgttaa 28948648  T
Q  123 ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaa 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28948647 ctggactgcctcttccttctggtgtttcggtttgcaaacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataa 28948548  T
Q  223 tgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 322  Q
    ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  28948547 tgaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcat 28948455  T
Q  323 gcctaaattcacaattaagacacaggttc 351  Q
    |||||||||||||||||||||||||||||    
T  28948454 gcctaaattcacaattaagacacaggttc 28948426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 22703381 - 22703070
Alignment:
Q  23 acctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaa 122  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |            |||||||    
T  22703381 acctgctacggctgggggtagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgttaa 22703292  T
Q  123 ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22703291 ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataa 22703192  T
Q  223 tgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 322  Q
    ||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  22703191 tgaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcat 22703099  T
Q  323 gcctaaattcacaattaagacacaggttc 351  Q
    ||||||||||||||||| |||||||||||    
T  22703098 gcctaaattcacaattatgacacaggttc 22703070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 22990736 - 22991047
Alignment:
Q  23 acctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaa 122  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |            |||||||    
T  22990736 acctgctacggctgggggtagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgttaa 22990825  T
Q  123 ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22990826 ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataa 22990925  T
Q  223 tgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 322  Q
    ||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  22990926 tgaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcat 22991018  T
Q  323 gcctaaattcacaattaagacacaggttc 351  Q
    ||||||||||||||||| |||||||||||    
T  22991019 gcctaaattcacaattatgacacaggttc 22991047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 22698733 - 22698848
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 323  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22698733 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22698825  T
Q  324 cctaaattcacaattaagacaca 346  Q
    |||||||||||||||||||||||    
T  22698826 cctaaattcacaattaagacaca 22698848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 346
Target Start/End: Complemental strand, 22981797 - 22981682
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 323  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22981797 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22981705  T
Q  324 cctaaattcacaattaagacaca 346  Q
    |||||||||||||||||||||||    
T  22981704 cctaaattcacaattaagacaca 22981682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 346
Target Start/End: Complemental strand, 22995384 - 22995269
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 323  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22995384 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22995292  T
Q  324 cctaaattcacaattaagacaca 346  Q
    |||||||||||||||||||||||    
T  22995291 cctaaattcacaattaagacaca 22995269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 56560508 - 56560591
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  56560508 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 56560591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 24036297 - 24036214
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24036297 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 24036214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 16565539 - 16565623
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| ||| | ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16565539 taatgaagtaatcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 15618844 - 15618928
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| ||||| ||||| ||||||| |||| || | |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  15618844 taatgaagtattcaattactatcactcaagtttaggatgcacaattgaaaaaacttttggggtatggaagaatagatttgcaatt 15618928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 52057042 - 52056997
Alignment:
Q  254 aggtgcacaatagaaagaacttttggtgtatggaagaatagatttg 299  Q
    |||||||||||||||| ||||||| | ||||||||||| |||||||    
T  52057042 aggtgcacaatagaaataacttttagggtatggaagaacagatttg 52056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 19648194 - 19648309
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 323  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  19648194 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 19648286  T
Q  324 cctaaattcacaattaagacaca 346  Q
    |||||||||||||||||||||||    
T  19648287 cctaaattcacaattaagacaca 19648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 193387 - 193470
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  193387 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 193470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 720991 - 721074
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  720991 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 882098 - 882181
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  882098 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 30983306 - 30983223
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30983306 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 30983223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 44240122 - 44240205
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| |||| |||| | ||||||||||||||||||||| ||||||||||| | |||||||||    
T  44240122 taatgaagtatttaattattatcactcaagtttaagatacacaatagaaagaacttttggggtatggaagaacatatttgcaat 44240205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 4345989 - 4346104
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 323  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  4345989 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 4346081  T
Q  324 cctaaattcacaattaagacaca 346  Q
    |||||||||||||||||||||||    
T  4346082 cctaaattcacaattaagacaca 4346104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 46407488 - 46407571
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  46407488 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 46407571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 50979022 - 50978939
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  50979022 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 50978939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 35606336 - 35606412
Alignment:
Q  227 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  35606336 gtatttaattattatcactcaagtttaaggtgcacaatagaaagaactgttggggtatggaagaacagatttgcaat 35606412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 35569990 - 35569906
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  35569990 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaataaatttgcaatt 35569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 50979067 - 50979027
Alignment:
Q  262 aatagaaagaacttttggtgtatggaagaatagatttgcaa 302  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  50979067 aatagaaagaacttttggggtatggaagaacagatttgcaa 50979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 22809984 - 22810099
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 323  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22809984 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22810076  T
Q  324 cctaaattcacaattaagacaca 346  Q
     ||||||||||||||||||||||    
T  22810077 actaaattcacaattaagacaca 22810099  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 33232457 - 33232540
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33232457 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 33232540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 7072115 - 7072032
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  7072115 taatgaagtatttaattattatcactcaaatttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 7072032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 22481515 - 22481599
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22481515 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 22481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 22808657 - 22808703
Alignment:
Q  117 tgttaactggactgcctcttccttctggtgtttcggtttgcagacat 163  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  22808657 tgttaattggactgcctcttccttctggtgtttcggtctgcagacat 22808703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 224 - 342
Target Start/End: Original strand, 7011653 - 7011764
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 323  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  7011653 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 7011745  T
Q  324 cctaaattcacaattaaga 342  Q
    |||||||||||||||||||    
T  7011746 cctaaattcacaattaaga 7011764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 51125466 - 51125383
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  51125466 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 51125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 52692542 - 52692625
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  52692542 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 52692625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 16246876 - 16246819
Alignment:
Q  247 aagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||| |||| |||||||| ||||||||||||   | ||||||||||||||||||||||    
T  16246876 aagtttaagatgcacaattgaaagaacttttaaggcatggaagaatagatttgcaatt 16246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 346
Target Start/End: Complemental strand, 23361058 - 23360942
Alignment:
Q  224 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaac-ttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 322  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||       |||||||||||||||||||||    
T  23361058 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaactttttggtgtatgaaagaatag-------atttgcaattctacgacgcat 23360966  T
Q  323 gcctaaattcacaattaagacaca 346  Q
    | ||||||||||||||||||||||    
T  23360965 gactaaattcacaattaagacaca 23360942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 13895999 - 13896082
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13895999 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 13896082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 14036616 - 14036699
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14036616 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14036699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 14380107 - 14380190
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14380107 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14380190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 5917028 - 5916944
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5917028 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 5916944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 36311597 - 36311681
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36311597 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 36311681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 21515786 - 21515703
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  21515786 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 21515703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 30019220 - 30019303
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 303  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  30019220 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 30019303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 16547456 - 16547540
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16547456 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16547540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 17830845 - 17830767
Alignment:
Q  227 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 305  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17830845 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 17830767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 37638703 - 37638788
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 305  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37638703 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggtgtatggaagaatagatttgcaattt 37638788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 10372799 - 10372714
Alignment:
Q  220 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 305  Q
    |||||| |||||  |||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  10372799 taatgaagtattcgattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 10372714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 12963342 - 12963387
Alignment:
Q  259 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 304  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  12963342 cacaattgaaagaacttttggggtatggaagaatagatttgcaatt 12963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 6678 - 6607
Alignment:
Q  227 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagattt 298  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  6678 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagattt 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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