View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6138_high_2 (Length: 296)
Name: NF6138_high_2
Description: NF6138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6138_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 7801047 - 7800787
Alignment:
| Q |
13 |
aaaatcagggtgagatagctttgttaaaaattgagttttctaaggttttttaagatttacgagtagcattgtaatttgtatgttttttgtggatgttggt |
112 |
Q |
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| T |
7801047 |
aaaatcagggtgagatagctttgttaaaaattgagttttctaaggttttttaagatttacgagtagtattgtaatttgtatgtttttggtgaatgttggt |
7800948 |
T |
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| Q |
113 |
ttgtttggttctcttcaatgacaagagttctcttatttagtgtttagtgtatagttttatcataaagacgacaaagcttgaagttgatcaaaattcataa |
212 |
Q |
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| T |
7800947 |
ttgtttggttctcttcaatgacaagagttcttttattta-------gtgtatagttttatcataaggacgacgaagcttgaagttgataaaaattcataa |
7800855 |
T |
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| Q |
213 |
atattgtgtaacattgtaaagagagcgacataatttgtgcctcaacttaaattttatttgcagttgat |
280 |
Q |
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| T |
7800854 |
atattgtgtaacattgtaaagagagcgatataatttgtgcctcaacttaaattttattcgcagttgat |
7800787 |
T |
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