View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6138_low_1 (Length: 338)
Name: NF6138_low_1
Description: NF6138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6138_low_1 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: scaffold0125 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 5105 - 5424
Alignment:
| Q |
19 |
attttgtatactattaggttaat----atgtcttatgttctagctagctttcctttatat---gtactttcaacgtttgacgcaaccacacaatttgttt |
111 |
Q |
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| T |
5105 |
attttgtatactattaggttaattaatatgttttatgttctagctagctttcctttatataatgtactttcaacgtttgacgcaaccacacaatttgttt |
5204 |
T |
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| Q |
112 |
tctcgtatgtttctcctttgacttagtattcacccatggtcat-cgagacttatggcataatatgttcct---ttcttcttcttttttattcggtgcact |
207 |
Q |
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| T |
5205 |
tctcgtatgtttctcctttgacttagtattcacccatgttcatccgacacttatggcataatatgttcctttcttcttcttcttttttattcggtgcact |
5304 |
T |
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| Q |
208 |
cttatactgnnnnnnnnccttatttaaaaaattcaaatcatttcttatacttcttttggggataaatcggtcataataagaatttattcttatattcttt |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5305 |
cttatactaaaaaaaaaccttatttaaaaaattcaaatcatttcttatacttcttttggggataaatcggtcataataagaatttattcttatattcttt |
5404 |
T |
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| Q |
308 |
atcatatttcctcttttcat |
327 |
Q |
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|||||||||||||||||||| |
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| T |
5405 |
atcatatttcctcttttcat |
5424 |
T |
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