View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6139_high_4 (Length: 367)
Name: NF6139_high_4
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6139_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 3 - 354
Target Start/End: Complemental strand, 54266260 - 54265912
Alignment:
| Q |
3 |
agtttgggtttacactttgcttttaggagcttcttttcttgcaatatgatttttaaaattgctcatatcttgatttatccattcagacnnnnnnnnnnnn |
102 |
Q |
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| T |
54266260 |
agtttgggtttacactttgcttttaggagcttcttttcttgcaatatgatttttaaaattgctcatatcttgatttatccattcagacaaaaaaaaaa-- |
54266163 |
T |
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| Q |
103 |
taatctttttgttcaattttactcatccaaaatgaggctattttcctcttaggatgattctatggctatacgaccatgcagaaaatagttgttcctggga |
202 |
Q |
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| T |
54266162 |
-aatcgttttgttcaaatttactcatccaacatgaggctattttcctcttaggatgattctatcgcaatacgaccatgcagaaaatatttgttcctggga |
54266064 |
T |
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| Q |
203 |
agtaattcaatgttgtaaagaaaacttgtttgaattctagaccaccaattaagcttcttataatttcaacaagtttgtggtgtttctaacaagctggcat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266063 |
agtaattcaatgttgtaaagaaaacttgtttgaattctagaccaccaattaagcttcttataatttcaacaagtttgtggtgtttctaacaagctggcat |
54265964 |
T |
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| Q |
303 |
gtgccaaagaacaatagaagaataaatgtaacattgctatacgtcatatttg |
354 |
Q |
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| T |
54265963 |
gtgccaaagaacaatagaagaataaatgtaacattgctatacgtcatatttg |
54265912 |
T |
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