View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6139_high_7 (Length: 251)
Name: NF6139_high_7
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6139_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 47627299 - 47627537
Alignment:
| Q |
1 |
tgcatgatcacacacaaaatatagagaagatgagtattgcaagttcaaacttgtctcatgcaatatttttatcatcagttgtatttacaggnnnnnnnnn |
100 |
Q |
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| T |
47627299 |
tgcatgatcatacacaaaatatagagaagatgagtattgcaagttcaaacttgtctcatgcgatattattatcatcagttgtatttacaggaaaaaaaa- |
47627397 |
T |
|
| Q |
101 |
ntgactcaaatgttt-aatttacaatacataaaaaataacagatccaaaaagatctgtaaacagactcgatgtttgttgcttacatttatgaaaatattt |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47627398 |
-tgactcaaatgttttaatttacaatacataaaaaataacagatccaaaaagatctgtaaacagactcgatgtttgttgcttacatttatgaaaatattt |
47627496 |
T |
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| Q |
200 |
tttctaagaatttgacattttttaatacactcatccttcat |
240 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||| |
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| T |
47627497 |
tttctaggaatttgacatttttgaatacactcatccttcat |
47627537 |
T |
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