View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6139_low_1 (Length: 622)

Name: NF6139_low_1
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6139_low_1
NF6139_low_1
[»] chr6 (5 HSPs)
chr6 (233-553)||(24797475-24797798)
chr6 (59-219)||(24797256-24797417)
chr6 (228-281)||(9975048-9975101)
chr6 (232-274)||(29408064-29408106)
chr6 (224-281)||(10345990-10346047)
[»] chr7 (9 HSPs)
chr7 (224-281)||(26402778-26402835)
chr7 (232-281)||(17883309-17883358)
chr7 (224-281)||(41514287-41514344)
chr7 (227-281)||(5248629-5248683)
chr7 (232-281)||(47405226-47405275)
chr7 (227-281)||(26804015-26804069)
chr7 (221-267)||(2347467-2347513)
chr7 (72-138)||(34397407-34397473)
chr7 (224-273)||(33899740-33899789)
[»] chr8 (8 HSPs)
chr8 (220-281)||(38236253-38236314)
chr8 (227-280)||(44254124-44254177)
chr8 (227-281)||(33650064-33650118)
chr8 (227-280)||(34336470-34336523)
chr8 (227-275)||(15271074-15271122)
chr8 (224-275)||(9774800-9774851)
chr8 (227-281)||(42704361-42704415)
chr8 (221-273)||(44960513-44960565)
[»] chr1 (11 HSPs)
chr1 (227-281)||(45925549-45925603)
chr1 (224-281)||(44958303-44958360)
chr1 (227-279)||(43492126-43492178)
chr1 (224-281)||(3483093-3483150)
chr1 (224-281)||(25670767-25670824)
chr1 (227-281)||(698822-698876)
chr1 (237-281)||(49003715-49003759)
chr1 (227-281)||(28188678-28188731)
chr1 (232-281)||(31822449-31822498)
chr1 (78-138)||(3996563-3996623)
chr1 (227-271)||(30494114-30494158)
[»] chr5 (11 HSPs)
chr5 (227-281)||(591220-591274)
chr5 (227-281)||(23129398-23129452)
chr5 (227-281)||(27146928-27146982)
chr5 (224-280)||(39046988-39047044)
chr5 (227-281)||(40872296-40872350)
chr5 (224-281)||(42265489-42265546)
chr5 (227-281)||(40458994-40459048)
chr5 (189-226)||(14328408-14328445)
chr5 (227-281)||(41520721-41520775)
chr5 (227-264)||(8415746-8415783)
chr5 (70-151)||(14688748-14688829)
[»] chr4 (15 HSPs)
chr4 (224-281)||(20180219-20180276)
chr4 (224-281)||(54495534-54495591)
chr4 (227-277)||(46088516-46088566)
chr4 (224-281)||(20787446-20787503)
chr4 (225-281)||(10042900-10042956)
chr4 (233-281)||(21988458-21988506)
chr4 (237-280)||(28695832-28695875)
chr4 (227-281)||(5047260-5047314)
chr4 (227-281)||(24753984-24754038)
chr4 (224-281)||(5091839-5091895)
chr4 (232-281)||(46521565-46521614)
chr4 (70-138)||(21240162-21240230)
chr4 (227-275)||(30161349-30161397)
chr4 (224-264)||(34124531-34124571)
chr4 (70-118)||(52820595-52820643)
[»] chr2 (3 HSPs)
chr2 (224-281)||(18375115-18375172)
chr2 (227-281)||(27501731-27501785)
chr2 (228-281)||(63942-63992)
[»] chr3 (6 HSPs)
chr3 (224-280)||(11465622-11465678)
chr3 (227-281)||(4275203-4275257)
chr3 (238-280)||(32734748-32734790)
chr3 (227-281)||(53605710-53605764)
chr3 (232-281)||(53641670-53641719)
chr3 (232-280)||(30364049-30364097)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 233 - 553
Target Start/End: Original strand, 24797475 - 24797798
Alignment:
Q  233 attgatttcataaattttgacaaaaatttactatttaaagttactaaactttgttaatatttcgctt-tcactaattatagttagggttcttgttagcat 331  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||  |||    |   | ||| | | || || |  ||| |||||||||||||||    
T  24797475 attgatttcataaactttgacaaaaacttactatttaaagttactaaacaatgtcctaagggcacttgttaatatttctctttaaggttcttgttagcat 24797574  T
Q  332 tttttgtgagcctttaaggttgaaatatgaatttccttaatnnnnnnnnn--ggttgaaatatgaattgttgatcagacgatctcgaacctactgattgc 429  Q
    ||||||||||||||||||||||||||||||||||||||||            | ||||||||||||||||||||||||||||||||||||||||||||||    
T  24797575 tttttgtgagcctttaaggttgaaatatgaatttccttaaaaaaaaaaaaaagtttgaaatatgaattgttgatcagacgatctcgaacctactgattgc 24797674  T
Q  430 atgacaacatcatttttcgactgcacataaattcaatccagtatgaatgacacaaggaattgaaaaatgtatgttgttaaataaatataccttgcaactt 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  24797675 atgacaacatcatttttcgactgcacataaattcaatccagtatgaatgacacaaggaattgaaaaatgcatgtggttaaataaatataccttgcaactt 24797774  T
Q  530 ggaaaatgacatatttagagataa 553  Q
    ||||||||||||||||||||||||    
T  24797775 ggaaaatgacatatttagagataa 24797798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 24797256 - 24797417
Alignment:
Q  59 ggatctaagcattaaaaaagaaaacaatttataactttcatgtactaaaaattgttttttaaaatttgaatgtgttgaatgtattatttctaacatcaaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||  || ||    |||||||||||||||||||||||||||||||||||| ||     
T  24797256 ggatctaagcattaaaaaagaaaacaatttataactttcatgaagtaaatttttttaaaaaaaatttgaatgtgttgaatgtattatttctaacataaat 24797355  T
Q  159 tttttactttggatatttttactaa-ggttttgttaatgagtgctttaagggcattctttaa 219  Q
    ||||||||||||||||||||||||| ||| ||||||| |   ||| |||||||| |||||||    
T  24797356 tttttactttggatatttttactaacggtcttgttaacgttagctctaagggcactctttaa 24797417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 9975101 - 9975048
Alignment:
Q  228 aatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9975101 aatatattgatttcataaactttaacaaaaatttactatttaaagttactaaac 9975048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 29408064 - 29408106
Alignment:
Q  232 cattgatttcataaattttgacaaaaatttactatttaaagtt 274  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  29408064 cattgatttcataaattttgacaaaaacttactatttaaagtt 29408106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 10346047 - 10345990
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| |||||||| |||||||| | |||||||||||||| ||||  |||||||||    
T  10346047 tttcaatgcattgattacataaattctaacaaaaatttactaattaagattactaaac 10345990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 26402835 - 26402778
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26402835 tttcaatacattgatttcataaattttgacaaaaacttactatttaaagttactaaac 26402778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 17883358 - 17883309
Alignment:
Q  232 cattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17883358 cattgatttcataaattttgacaaaaacttactatttaaagttactaaac 17883309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 41514344 - 41514287
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  41514344 tttcaatacattgatttcataaactttgactaaaacttactatttaaagttactaaac 41514287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 5248683 - 5248629
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  5248683 caatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaac 5248629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 47405275 - 47405226
Alignment:
Q  232 cattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  47405275 cattgatttcataaactttgacaaaaacttactatttaaagttactaaac 47405226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 26804069 - 26804015
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||| ||||| ||||||||||| |||||||||||||||| |||||    
T  26804069 caatgcattgattttataaactttgacaaaaacttactatttaaagttattaaac 26804015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 2347467 - 2347513
Alignment:
Q  221 aaatttcaatacattgatttcataaattttgacaaaaatttactatt 267  Q
    |||||||||| |||||||| |||||||||| | ||||||||||||||    
T  2347467 aaatttcaatgcattgattacataaattttaataaaaatttactatt 2347513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 34397473 - 34397407
Alignment:
Q  72 aaaaaagaaaacaatttataactttcatgtactaaaaattgttttttaaaatttgaatgtgttgaat 138  Q
    |||||| ||||||||  |||| ||| ||||   ||||||||||||||||||||| ||||||||||||    
T  34397473 aaaaaataaaacaataaataaattttatgtgaaaaaaattgttttttaaaattttaatgtgttgaat 34397407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 33899789 - 33899740
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagt 273  Q
    |||||||  |||||||||||||||||| ||||||| ||| ||||||||||    
T  33899789 tttcaatgtattgatttcataaattttaacaaaaacttaatatttaaagt 33899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 38236314 - 38236253
Alignment:
Q  220 aaaatttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38236314 aaaatttcaatgcattgatttcataaattttgacaaaattttactatttaaagttattaaac 38236253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 44254177 - 44254124
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaa 280  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44254177 caatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaa 44254124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 33650064 - 33650118
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  33650064 caatgcattgatttcatacattttgacaaaaacttactatttaaagttactaaac 33650118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 34336523 - 34336470
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaa 280  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  34336523 caatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaa 34336470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 15271074 - 15271122
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagtta 275  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  15271074 caatgcattgatttcataaattttgacaaaaacttactatttaaagtta 15271122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 9774800 - 9774851
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagtta 275  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  9774800 tttcaatgcattgatttcataagctttgacaaaaatttactatttaaagtta 9774851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 42704361 - 42704415
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  42704361 caatgcattaatttcataaattttgacaaaaacttactatttaaagttagtaaac 42704415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 44960513 - 44960565
Alignment:
Q  221 aaatttcaatacattgatttcataaattttgacaaaaatttactatttaaagt 273  Q
    |||||||||| |||||||| |||||||||| | |||||||||||||| |||||    
T  44960513 aaatttcaatgcattgattacataaattttcataaaaatttactattaaaagt 44960565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 45925549 - 45925603
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  45925549 caatacattgatttcataaactttgacaaaaacttactatttaaagttactaaac 45925603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 44958360 - 44958303
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  44958360 tttcaatgcattgatttcataaactttaacaaaaatttactatttaaagttactaaac 44958303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 43492178 - 43492126
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaa 279  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43492178 caatgcattgatttcataaactttgacaaaaatttactatttaaagttactaa 43492126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 3483093 - 3483150
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  3483093 tttcaatgcatcgatttcataaactttgacaaaaacttactatttaaagttactaaac 3483150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 25670824 - 25670767
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25670824 tttcaatgcattgatttcataaactttaacaaaaacttactatttaaagttactaaac 25670767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 698876 - 698822
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  698876 caatgcattgatttcataaactttgataaaaacttactatttaaagttactaaac 698822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 49003715 - 49003759
Alignment:
Q  237 atttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||||||||| |||||||||||||||||||||||||||| |||||    
T  49003715 atttcataaactttgacaaaaatttactatttaaagttattaaac 49003759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 28188678 - 28188731
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||||||  ||||||| |||||||||||||||| |||||    
T  28188678 caatgcattgatttcataaattta-acaaaaacttactatttaaagttattaaac 28188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 31822449 - 31822498
Alignment:
Q  232 cattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||| ||||| ||||||||||  ||||||| ||||||||||||||    
T  31822449 cattgattttataaactttgacaaaagcttactatctaaagttactaaac 31822498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 3996563 - 3996623
Alignment:
Q  78 gaaaacaatttataactttcatgtactaaaaattgttttttaaaatttgaatgtgttgaat 138  Q
    ||||| |||| ||||||||||||||  |||||||||||||| | |||| ||| ||||||||    
T  3996563 gaaaataattgataactttcatgtaagaaaaattgttttttgatatttcaatatgttgaat 3996623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 30494114 - 30494158
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaa 271  Q
    |||||||||||||||||||  ||| ||||||| ||||||||||||    
T  30494114 caatacattgatttcataatctttaacaaaaacttactatttaaa 30494158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 591274 - 591220
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  591274 caatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaac 591220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 23129398 - 23129452
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  23129398 caatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaac 23129452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 27146928 - 27146982
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  27146928 caatgcattgatttcataaactttgacaaaaacttactatttaaagttactaaac 27146982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 39046988 - 39047044
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaa 280  Q
    ||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  39046988 tttcaatgcattgatttcataaactttgagaaaaattaactatttaaagttactaaa 39047044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 40872296 - 40872350
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  40872296 caatgcattgatttcataaactttgataaaaacttactatttaaagttactaaac 40872350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 42265489 - 42265546
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| ||||||||||||||| || |||||||| ||||||| ||||||||||||||    
T  42265489 tttcaatgcattgatttcataaacttagacaaaaacttactatataaagttactaaac 42265546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 40458994 - 40459048
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||||||||||| ||||| |||||||||| |||||    
T  40458994 caatgcattgatttcataaactttgacaaaaacttactctttaaagttattaaac 40459048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 14328408 - 14328445
Alignment:
Q  189 tgttaatgagtgctttaagggcattctttaaaaaattt 226  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14328408 tgttaatgagtgatttaagggcattctttaaaaaattt 14328445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 41520721 - 41520775
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||| ||||| ||||| ||||| |||||||||||||||| |||||    
T  41520721 caatgcattgattttataaactttgataaaaacttactatttaaagttattaaac 41520775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 8415746 - 8415783
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttact 264  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  8415746 caatacattgatttcataaactttgacaaaaacttact 8415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 14688829 - 14688748
Alignment:
Q  70 ttaaaaaagaaaacaatttataactttcatgtactaaaaattgttttttaaaatttgaatgtgttgaatgtattatttctaa 151  Q
    |||||||  |||| ||||||||| ||| |||||  |||||||  |||||||| ||| ||||||||||||| || ||||||||    
T  14688829 ttaaaaataaaaataatttataagttttatgtaaaaaaaattagtttttaaactttcaatgtgttgaatgaatcatttctaa 14688748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 20180276 - 20180219
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  20180276 tttcaatgcattaatttcataaactttgacaaaaatttactatttaaagttcctaaac 20180219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 54495534 - 54495591
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  54495534 tttcaatgcattgatttcataaactttgataaaaacttactatttaaagttactaaac 54495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 46088566 - 46088516
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttact 277  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  46088566 caatgcattgatttcataaactttgacaaaaacttactatttaaagttact 46088516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 20787446 - 20787503
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||||| | |||||||    
T  20787446 tttcaatacattgatttcataaactttgacaaaattttaccatttaaaatcactaaac 20787503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 10042900 - 10042956
Alignment:
Q  225 ttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||||| ||||||||||||||||||| | ||||| |||||||||||||||| |||||    
T  10042900 ttcaatgcattgatttcataaattttaataaaaacttactatttaaagttattaaac 10042956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 21988506 - 21988458
Alignment:
Q  233 attgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  21988506 attgatttcataaactttgacaaaaacttactatttaaagttattaaac 21988458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 28695832 - 28695875
Alignment:
Q  237 atttcataaattttgacaaaaatttactatttaaagttactaaa 280  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  28695832 atttcataaactttgacaaaaatttactatttaaagttattaaa 28695875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 5047260 - 5047314
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||| | ||||| ||||||||||||||||||||||    
T  5047260 caatgcattgatttcataaactttaaaaaaaacttactatttaaagttactaaac 5047314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 24753984 - 24754038
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||||||||| ||| | ||||||||||||||||||||| ||||||    
T  24753984 caatgcattgatttcataaactttcataaaaatttactatttaaagtttctaaac 24754038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 5091895 - 5091839
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| |||||||| |||||| ||| ||||||||||| ||||||||||||||||||    
T  5091895 tttcaatgcattgatt-cataaaatttaacaaaaatttattatttaaagttactaaac 5091839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 46521565 - 46521614
Alignment:
Q  232 cattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||||||| ||| ||||||||||| |||||||||| |||||||    
T  46521565 cattgatttcataaactttaacaaaaatttattatttaaagtcactaaac 46521614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 21240230 - 21240162
Alignment:
Q  70 ttaaaaaagaaaacaatttataactttcatgtactaaaaattgttttttaaaatttgaatgtgttgaat 138  Q
    ||||||| | |||||||| |||||||||| |||  |||| ||||||||||| |||| ||||||||||||    
T  21240230 ttaaaaatggaaacaattgataactttcacgtagaaaaagttgttttttaatatttcaatgtgttgaat 21240162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 30161397 - 30161349
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagtta 275  Q
    |||| ||||||||||||||| ||| ||||||| ||||||||||||||||    
T  30161397 caatgcattgatttcataaactttaacaaaaacttactatttaaagtta 30161349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 34124571 - 34124531
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttact 264  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  34124571 tttcaatgcattgatttcataaactttgacaaaaatttact 34124531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 52820595 - 52820643
Alignment:
Q  70 ttaaaaaagaaaacaatttataactttcatgtactaaaaattgtttttt 118  Q
    ||||||| |||||||||| |||||||| |||||  ||||||||||||||    
T  52820595 ttaaaaatgaaaacaattaataacttttatgtataaaaaattgtttttt 52820643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 18375115 - 18375172
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  18375115 tttcaatgcattgatttcataaactttgacaaaaacttactatttaaagtcactaaac 18375172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 27501785 - 27501731
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  27501785 caatgcattaatttcataaactttgacaaaaacttactatttaaagttactaaac 27501731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 63942 - 63992
Alignment:
Q  228 aatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||||||| |||||||||||||||||||||| ||||||   |||||||||||||    
T  63942 aatacattaatttcataaattttgacaaaaacttacta---aaagttactaaac 63992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 11465678 - 11465622
Alignment:
Q  224 tttcaatacattgatttcataaattttgacaaaaatttactatttaaagttactaaa 280  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||    
T  11465678 tttcaatacagtgatttcataaactttgacaaaaacttactatttaaagtttctaaa 11465622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 4275257 - 4275203
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||||||||||||| ||||| ||||||||||| ||| |||||||||||| |||||    
T  4275257 caatacattgattttataaactttgacaaaaacttattatttaaagttattaaac 4275203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 32734748 - 32734790
Alignment:
Q  238 tttcataaattttgacaaaaatttactatttaaagttactaaa 280  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  32734748 tttcataaattttgacaaaaacttactacttaaagttactaaa 32734790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 53605710 - 53605764
Alignment:
Q  227 caatacattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    |||| ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||    
T  53605710 caatgcattgattttataaactttgataaaaacttactatttaaagttactaaac 53605764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 53641719 - 53641670
Alignment:
Q  232 cattgatttcataaattttgacaaaaatttactatttaaagttactaaac 281  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||| |||||    
T  53641719 cattgatttcataaactttgacaaaaacttactattcaaagttattaaac 53641670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 30364097 - 30364049
Alignment:
Q  232 cattgatttcataaattttgacaaaaatttactatttaaagttactaaa 280  Q
    ||||||||||||||| ||| ||||||| || |||||||||||| |||||    
T  30364097 cattgatttcataaactttaacaaaaacttgctatttaaagttgctaaa 30364049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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