View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6139_low_11 (Length: 248)

Name: NF6139_low_11
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6139_low_11
NF6139_low_11
[»] chr6 (1 HSPs)
chr6 (207-243)||(15951296-15951332)
[»] chr8 (5 HSPs)
chr8 (207-243)||(6536566-6536602)
chr8 (207-243)||(23361643-23361679)
chr8 (207-239)||(28783106-28783138)
chr8 (207-243)||(33017260-33017296)
chr8 (207-239)||(36205241-36205273)
[»] chr7 (6 HSPs)
chr7 (207-243)||(2882996-2883032)
chr7 (210-243)||(7721418-7721451)
chr7 (207-243)||(21558174-21558210)
chr7 (207-243)||(26459404-26459440)
chr7 (207-243)||(29785295-29785331)
chr7 (207-239)||(42712004-42712036)
[»] chr5 (5 HSPs)
chr5 (207-239)||(16457856-16457888)
chr5 (207-243)||(14285207-14285243)
chr5 (207-243)||(25627103-25627139)
chr5 (207-239)||(30883196-30883228)
chr5 (207-243)||(43442242-43442278)
[»] chr3 (2 HSPs)
chr3 (207-243)||(53412991-53413027)
chr3 (210-243)||(34062542-34062575)
[»] scaffold0002 (1 HSPs)
scaffold0002 (207-243)||(94965-95001)
[»] chr4 (2 HSPs)
chr4 (207-243)||(7949448-7949484)
chr4 (207-243)||(37109345-37109381)
[»] chr2 (2 HSPs)
chr2 (207-243)||(33839254-33839290)
chr2 (207-243)||(45026789-45026825)
[»] chr1 (7 HSPs)
chr1 (207-243)||(2799908-2799944)
chr1 (207-243)||(3265970-3266006)
chr1 (207-243)||(8904460-8904496)
chr1 (207-243)||(9165189-9165225)
chr1 (207-243)||(17745250-17745286)
chr1 (207-243)||(33700767-33700803)
chr1 (207-239)||(43446009-43446041)


Alignment Details
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 15951332 - 15951296
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  15951332 gtgctcctcctcaaggtctcatgttcaattctctctg 15951296  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 6536566 - 6536602
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6536566 gtgctcctcctcaaggtctcaggttcaattctctctg 6536602  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 23361679 - 23361643
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||||||||||||||    
T  23361679 gtgctcctcctcaaggtctcaggttcaattctctctg 23361643  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 28783106 - 28783138
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctc 239  Q
    |||||||||||||||||||||||||| ||||||    
T  28783106 gtgctcctcctcaaggtctcatgttcgattctc 28783138  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 33017260 - 33017296
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  33017260 gtgctcctcctcaaggtctcaggttcgattctctctg 33017296  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 36205241 - 36205273
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctc 239  Q
    |||||||||||||||||||||||||| ||||||    
T  36205241 gtgctcctcctcaaggtctcatgttcgattctc 36205273  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 2882996 - 2883032
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2882996 gtgctcctcctcaaggtctcaggttcaattctctctg 2883032  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 7721418 - 7721451
Alignment:
Q  210 ctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||||| ||||||||||    
T  7721418 ctcctcctcaaggtctcatgttcgattctctctg 7721451  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 21558174 - 21558210
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  21558174 gtgctcctcctcaaggtctcaggttcgattctctctg 21558210  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 26459440 - 26459404
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  26459440 gtgctcctcctcaaggtctcaggttcgattctctctg 26459404  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 29785331 - 29785295
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  29785331 gtgctcctcctcaaggtctcatgttcgattctttctg 29785295  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 42712004 - 42712036
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctc 239  Q
    |||||||||||||||||||||||||| ||||||    
T  42712004 gtgctcctcctcaaggtctcatgttcgattctc 42712036  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 16457856 - 16457888
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctc 239  Q
    |||||||||||||||||||||||||||||||||    
T  16457856 gtgctcctcctcaaggtctcatgttcaattctc 16457888  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 14285207 - 14285243
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  14285207 gtgctcctcctcaaggtctcaggttcgattctctctg 14285243  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 25627103 - 25627139
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  25627103 gtgctcctcctcaaggtctcaggttcgattctctctg 25627139  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 30883228 - 30883196
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctc 239  Q
    ||||||||||||||||||||| |||||||||||    
T  30883228 gtgctcctcctcaaggtctcaagttcaattctc 30883196  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 43442242 - 43442278
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  43442242 gtgctcctcctcaaggtctcaggttcgattctctctg 43442278  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 53412991 - 53413027
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||||||||||||||    
T  53412991 gtgctcctcctcaaggtctcaggttcaattctctctg 53413027  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 34062575 - 34062542
Alignment:
Q  210 ctcctcctcaaggtctcatgttcaattctctctg 243  Q
    |||||||||||||||||| |||||||||||||||    
T  34062575 ctcctcctcaaggtctcaggttcaattctctctg 34062542  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 95001 - 94965
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  95001 gtgctcctcctcaaggtctcaggttcaattatctctg 94965  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 7949484 - 7949448
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  7949484 gtgctcctcctcaaggtctcaggttcgattctctctg 7949448  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 37109381 - 37109345
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  37109381 gtgctcctcctcaaggtctcaggttcgattctctctg 37109345  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 33839290 - 33839254
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  33839290 gtgctcctcctcaaggtctcaggttcaattctttctg 33839254  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 45026789 - 45026825
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    |||||||||||||||||||||||||  ||||||||||    
T  45026789 gtgctcctcctcaaggtctcatgtttgattctctctg 45026825  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 2799908 - 2799944
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  2799908 gtgctcctcctcaaggtctcaggttcgattctctctg 2799944  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 3265970 - 3266006
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  3265970 gtgctcctcctcaaggtctcaggttcgattctctctg 3266006  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 8904460 - 8904496
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  8904460 gtgctcctcctcaaggtctcaagttcgattctctctg 8904496  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 9165225 - 9165189
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    |||||||||||||| |||||| |||||||||||||||    
T  9165225 gtgctcctcctcaaagtctcaggttcaattctctctg 9165189  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 17745286 - 17745250
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  17745286 gtgctcctcctcgaggtctcatgttcgattctctctg 17745250  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 33700803 - 33700767
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctctctg 243  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  33700803 gtgctcctcctcaaggtctcaggttcgattctctctg 33700767  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 43446009 - 43446041
Alignment:
Q  207 gtgctcctcctcaaggtctcatgttcaattctc 239  Q
    |||||||||||||||||||||||||| ||||||    
T  43446009 gtgctcctcctcaaggtctcatgttcgattctc 43446041  T

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