View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6139_low_13 (Length: 237)
Name: NF6139_low_13
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6139_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 49686334 - 49686098
Alignment:
| Q |
1 |
tcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatc |
100 |
Q |
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| T |
49686334 |
tcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatc |
49686235 |
T |
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| Q |
101 |
ctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgattttctatcattta |
200 |
Q |
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| T |
49686234 |
ctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgattttctatcattta |
49686135 |
T |
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| Q |
201 |
tttgttttgaaattgaaactcactttttgctaaattc |
237 |
Q |
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| T |
49686134 |
tttgttttgaaattgaaacccaatttttgctaaattc |
49686098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 49690554 - 49690421
Alignment:
| Q |
32 |
aactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgac |
131 |
Q |
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| T |
49690554 |
aactaaagccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgac |
49690458 |
T |
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| Q |
132 |
ttggaaaat---tactacacaagtcatgtgaatttgt |
165 |
Q |
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| T |
49690457 |
ttggaaaatgagtaccacacaagtcttgtaaatttgt |
49690421 |
T |
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