View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6139_low_2 (Length: 484)
Name: NF6139_low_2
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6139_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 464
Target Start/End: Complemental strand, 46895103 - 46894655
Alignment:
| Q |
15 |
ctgtggctagcaatggtggcagcaactcgtcaaatcttgttgcgccggtggcacctgaacaatccggcgaaggtttaccctatgcgccggagaattttcc |
114 |
Q |
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| T |
46895103 |
ctgtggctagcaatggtggcagcaactcgtcaaatcttgttgcgccggtggcacctgaacaatccggcgaaggtttaccctatgcgccggagaattttcc |
46895004 |
T |
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| Q |
115 |
gaatcccggtgacatttggcgatggaaatccggtaagaggatttcaaataacggtaattatcgagaccggtatctgtatgttcctcatcgtcttgttgca |
214 |
Q |
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| T |
46895003 |
gaatcccggtgacatttggcgatggaaatccggtaagaggatttcaaataacggtaactatcgagaccggtatctgtatgttcctcatcgtcttgttgca |
46894904 |
T |
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| Q |
215 |
aaccgaagctcgattatatttaaaagcaagctttccgttgaacgctatgtcaaagaaaagtttcctgacgttaatattactgaattcttcgattcattca |
314 |
Q |
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| T |
46894903 |
aaccgaagctcgattatatttaaaagcaagctttccgttgaacgctatgtcaaagaaaagtttcctgacgttaatattactgaattcttcgattcattca |
46894804 |
T |
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| Q |
315 |
catggtccattccttctggtcttccaggtctgtttcgttgctatgttcttatactgtttttctactgacattgacgagttgacactgataatttatttga |
414 |
Q |
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| T |
46894803 |
catggtccattccttctggtcttccaggtctgtttcgttgctatgttcttatactgtttttctactgacattgacgagttgacactgataatttatttga |
46894704 |
T |
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| Q |
415 |
taaaatgacgcaatttattgtaatcacatgtatcggtgtcggacattgac |
464 |
Q |
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| T |
46894703 |
taaaatgacgcaatttagtgtaatcacatgtatc-gtgtcgtacattgac |
46894655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 32154630 - 32154685
Alignment:
| Q |
409 |
atttgataaaatgacgcaatttattgtaatcacatgtatcggtgtcggacattgac |
464 |
Q |
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|||||| |||||||| ||||||| || |||||||||| |||||||||||||||||| |
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| T |
32154630 |
atttgagaaaatgacacaatttactgcaatcacatgtctcggtgtcggacattgac |
32154685 |
T |
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