View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6139_low_5 (Length: 323)

Name: NF6139_low_5
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6139_low_5
NF6139_low_5
[»] chr4 (38 HSPs)
chr4 (1-308)||(7342071-7342378)
chr4 (44-116)||(4191663-4191736)
chr4 (17-111)||(485978-486073)
chr4 (7-114)||(30024587-30024694)
chr4 (8-110)||(19304816-19304918)
chr4 (20-114)||(24443938-24444032)
chr4 (44-114)||(36734817-36734887)
chr4 (41-102)||(969433-969494)
chr4 (17-114)||(8703696-8703795)
chr4 (8-110)||(23676604-23676707)
chr4 (43-114)||(54325113-54325184)
chr4 (8-114)||(22684592-22684698)
chr4 (8-70)||(54414837-54414899)
chr4 (8-65)||(33640996-33641053)
chr4 (51-112)||(47970249-47970310)
chr4 (52-116)||(51044532-51044597)
chr4 (44-101)||(51555956-51556013)
chr4 (37-113)||(24160572-24160648)
chr4 (51-114)||(9680595-9680658)
chr4 (123-154)||(23819123-23819154)
chr4 (43-114)||(44319873-44319943)
chr4 (44-114)||(5219576-5219646)
chr4 (28-114)||(24193493-24193579)
chr4 (76-114)||(31038943-31038981)
chr4 (8-68)||(4243228-4243289)
chr4 (51-116)||(7731701-7731766)
chr4 (8-101)||(8422926-8423019)
chr4 (41-114)||(19422339-19422412)
chr4 (8-49)||(36048415-36048456)
chr4 (51-111)||(6987820-6987880)
chr4 (62-114)||(19691349-19691401)
chr4 (62-114)||(19701934-19701986)
chr4 (51-111)||(20907104-20907164)
chr4 (83-115)||(24929456-24929488)
chr4 (2-70)||(25548649-25548717)
chr4 (38-114)||(32724037-32724113)
chr4 (41-101)||(44019444-44019504)
chr4 (52-116)||(50396646-50396709)
[»] chr5 (31 HSPs)
chr5 (8-115)||(41052778-41052885)
chr5 (20-114)||(20982211-20982305)
chr5 (8-97)||(26516186-26516275)
chr5 (7-113)||(6738484-6738590)
chr5 (8-101)||(29115302-29115395)
chr5 (28-114)||(37063150-37063236)
chr5 (18-95)||(16945076-16945155)
chr5 (53-116)||(7096201-7096264)
chr5 (16-114)||(9860874-9860972)
chr5 (44-114)||(19177403-19177473)
chr5 (18-102)||(32172551-32172635)
chr5 (42-114)||(35135738-35135810)
chr5 (9-116)||(37611267-37611372)
chr5 (9-116)||(37787997-37788102)
chr5 (8-104)||(39257472-39257568)
chr5 (83-114)||(14295469-14295500)
chr5 (83-114)||(28586842-28586873)
chr5 (8-106)||(6739760-6739858)
chr5 (18-96)||(29588778-29588856)
chr5 (81-111)||(38831535-38831565)
chr5 (84-114)||(41277426-41277456)
chr5 (85-114)||(583849-583878)
chr5 (83-112)||(985596-985625)
chr5 (9-70)||(2569822-2569883)
chr5 (195-240)||(17369309-17369354)
chr5 (85-114)||(32059665-32059694)
chr5 (36-111)||(11835192-11835268)
chr5 (83-111)||(29117009-29117037)
chr5 (42-110)||(31694440-31694508)
chr5 (17-69)||(33961600-33961652)
chr5 (41-109)||(35095864-35095932)
[»] scaffold0590 (1 HSPs)
scaffold0590 (8-114)||(1150-1256)
[»] scaffold0275 (1 HSPs)
scaffold0275 (8-114)||(2719-2825)
[»] chr6 (24 HSPs)
chr6 (8-110)||(9027465-9027567)
chr6 (28-105)||(2514610-2514687)
chr6 (17-112)||(33068639-33068734)
chr6 (20-114)||(3217266-3217360)
chr6 (20-114)||(18264231-18264323)
chr6 (19-110)||(32386179-32386270)
chr6 (8-70)||(33828534-33828596)
chr6 (45-114)||(10154146-10154215)
chr6 (76-116)||(31964669-31964710)
chr6 (8-109)||(32975866-32975967)
chr6 (42-114)||(323733-323805)
chr6 (17-93)||(31461575-31461651)
chr6 (26-113)||(9732382-9732469)
chr6 (43-114)||(29274305-29274376)
chr6 (80-114)||(3204618-3204652)
chr6 (29-114)||(7351684-7351769)
chr6 (17-110)||(8349744-8349837)
chr6 (42-107)||(8420280-8420345)
chr6 (45-114)||(10452436-10452505)
chr6 (83-116)||(31672542-31672575)
chr6 (51-111)||(20671944-20672004)
chr6 (27-98)||(27727165-27727237)
chr6 (53-113)||(29940729-29940789)
chr6 (76-116)||(31968091-31968131)
[»] chr2 (28 HSPs)
chr2 (6-114)||(28803582-28803690)
chr2 (21-107)||(36852366-36852452)
chr2 (28-114)||(4550685-4550771)
chr2 (12-110)||(10143064-10143162)
chr2 (8-116)||(32098382-32098493)
chr2 (17-114)||(33192090-33192187)
chr2 (43-114)||(17952777-17952848)
chr2 (36-102)||(33197327-33197393)
chr2 (21-114)||(34054977-34055075)
chr2 (43-114)||(11513824-11513892)
chr2 (185-241)||(22878194-22878250)
chr2 (51-102)||(25609727-25609778)
chr2 (8-103)||(31461326-31461421)
chr2 (27-69)||(44589941-44589984)
chr2 (84-114)||(5043636-5043666)
chr2 (17-114)||(6926518-6926612)
chr2 (52-169)||(7282950-7283076)
chr2 (36-114)||(14209193-14209271)
chr2 (52-114)||(18962114-18962176)
chr2 (29-114)||(25790037-25790120)
chr2 (51-109)||(27288564-27288622)
chr2 (83-113)||(33942113-33942143)
chr2 (16-70)||(43808472-43808526)
chr2 (17-70)||(13189507-13189560)
chr2 (83-112)||(29429835-29429864)
chr2 (21-70)||(41949966-41950015)
chr2 (86-114)||(33256706-33256734)
chr2 (21-69)||(37844847-37844895)
[»] chr8 (32 HSPs)
chr8 (17-116)||(20672669-20672768)
chr8 (8-110)||(14482090-14482192)
chr8 (8-111)||(10079142-10079245)
chr8 (10-105)||(27320206-27320300)
chr8 (8-114)||(4558686-4558792)
chr8 (17-67)||(27754556-27754606)
chr8 (8-114)||(35453699-35453805)
chr8 (44-110)||(35534941-35535007)
chr8 (20-114)||(35869737-35869831)
chr8 (19-116)||(40280279-40280376)
chr8 (8-70)||(43208253-43208315)
chr8 (51-116)||(14929190-14929255)
chr8 (21-113)||(29699155-29699247)
chr8 (9-48)||(4271836-4271875)
chr8 (80-111)||(6918258-6918289)
chr8 (8-55)||(6950224-6950271)
chr8 (8-115)||(34563138-34563245)
chr8 (36-115)||(40357815-40357894)
chr8 (29-107)||(39392744-39392822)
chr8 (37-103)||(40356788-40356854)
chr8 (8-114)||(41336721-41336827)
chr8 (51-113)||(42597332-42597394)
chr8 (82-116)||(43907873-43907907)
chr8 (81-114)||(1112218-1112251)
chr8 (17-70)||(12972753-12972806)
chr8 (44-116)||(14949812-14949884)
chr8 (50-111)||(26215426-26215487)
chr8 (8-49)||(34290800-34290841)
chr8 (31-116)||(36643945-36644030)
chr8 (50-111)||(37444494-37444555)
chr8 (17-69)||(12496575-12496627)
chr8 (42-110)||(40728498-40728566)
[»] chr7 (28 HSPs)
chr7 (20-114)||(9527166-9527260)
chr7 (44-116)||(7244626-7244698)
chr7 (36-110)||(3610820-3610894)
chr7 (19-111)||(30133950-30134040)
chr7 (17-114)||(45593795-45593891)
chr7 (60-114)||(5006585-5006639)
chr7 (20-114)||(12835013-12835107)
chr7 (8-114)||(25659958-25660063)
chr7 (36-114)||(27121662-27121740)
chr7 (8-114)||(27481370-27481476)
chr7 (8-106)||(31341082-31341180)
chr7 (52-114)||(33894555-33894616)
chr7 (17-103)||(49060437-49060523)
chr7 (41-114)||(35536028-35536101)
chr7 (17-110)||(47003984-47004077)
chr7 (45-117)||(3241366-3241438)
chr7 (83-115)||(30160965-30160997)
chr7 (76-116)||(33601167-33601207)
chr7 (52-110)||(28165023-28165081)
chr7 (80-110)||(31338468-31338498)
chr7 (8-93)||(22388001-22388086)
chr7 (85-114)||(29363483-29363512)
chr7 (52-112)||(5276156-5276216)
chr7 (46-114)||(24973870-24973938)
chr7 (17-69)||(28844383-28844435)
chr7 (8-68)||(39630509-39630569)
chr7 (83-115)||(44239055-44239087)
chr7 (84-116)||(47616704-47616736)
[»] chr3 (29 HSPs)
chr3 (8-114)||(38462169-38462275)
chr3 (28-112)||(41028929-41029013)
chr3 (8-110)||(20504100-20504202)
chr3 (52-114)||(20192682-20192744)
chr3 (7-114)||(23785140-23785249)
chr3 (44-114)||(27792796-27792866)
chr3 (11-116)||(39971210-39971315)
chr3 (17-66)||(21574389-21574438)
chr3 (58-115)||(40122827-40122884)
chr3 (8-113)||(51278234-51278339)
chr3 (51-111)||(12923404-12923464)
chr3 (185-241)||(21872213-21872269)
chr3 (44-116)||(44284132-44284204)
chr3 (43-114)||(22232749-22232820)
chr3 (28-111)||(36101476-36101559)
chr3 (115-154)||(36646387-36646426)
chr3 (83-114)||(49586992-49587023)
chr3 (80-110)||(1816543-1816573)
chr3 (8-70)||(28289241-28289303)
chr3 (61-103)||(32555068-32555110)
chr3 (44-114)||(32703062-32703132)
chr3 (53-114)||(1395604-1395665)
chr3 (57-114)||(8007771-8007828)
chr3 (17-70)||(29094278-29094331)
chr3 (37-102)||(41159026-41159091)
chr3 (44-116)||(16790430-16790502)
chr3 (14-70)||(28842977-28843033)
chr3 (44-112)||(52450130-52450198)
chr3 (83-115)||(53457340-53457372)
[»] chr1 (30 HSPs)
chr1 (8-114)||(17420091-17420197)
chr1 (8-68)||(24263261-24263321)
chr1 (44-116)||(42550165-42550237)
chr1 (44-114)||(44032075-44032145)
chr1 (17-114)||(23895233-23895330)
chr1 (17-111)||(48282029-48282125)
chr1 (83-114)||(15360857-15360888)
chr1 (51-114)||(33527223-33527286)
chr1 (39-114)||(34380364-34380439)
chr1 (54-109)||(43029482-43029537)
chr1 (51-114)||(45999364-45999427)
chr1 (51-110)||(46499934-46499993)
chr1 (27-112)||(4549772-4549858)
chr1 (83-113)||(12477364-12477394)
chr1 (42-116)||(23373364-23373438)
chr1 (76-114)||(27738256-27738294)
chr1 (8-114)||(44936666-44936772)
chr1 (58-116)||(50319230-50319288)
chr1 (83-116)||(14737779-14737812)
chr1 (76-109)||(40943465-40943498)
chr1 (45-114)||(45107548-45107616)
chr1 (17-58)||(48133071-48133112)
chr1 (41-114)||(52286599-52286672)
chr1 (8-112)||(608343-608447)
chr1 (46-114)||(6933037-6933105)
chr1 (17-114)||(26184652-26184745)
chr1 (38-110)||(28909910-28909980)
chr1 (58-114)||(35080146-35080202)
chr1 (52-116)||(38651483-38651547)
chr1 (8-104)||(49173293-49173389)
[»] scaffold0024 (1 HSPs)
scaffold0024 (27-114)||(27483-27570)
[»] scaffold0508 (1 HSPs)
scaffold0508 (27-114)||(9851-9938)
[»] scaffold0072 (1 HSPs)
scaffold0072 (17-114)||(4869-4966)
[»] scaffold0349 (1 HSPs)
scaffold0349 (27-98)||(5744-5816)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 7342071 - 7342378
Alignment:
Q  1 cgctttcataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtc 100  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7342071 cgctttgataaacattttaattaagtgcttatagtataaatgcttatcagataagtgcttatgtataagcacttactacagtaaaagataaaataaagtc 7342170  T
Q  101 aaactgttttcataagagagtctatagaaataagatgaaaacaacttatggacacattataacttgttttcatctgtcaactacaacagtctcgcaagtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7342171 aaactgttttcataagagagtctatagaaataagatgaaaacaacttacggacacattataacttgttttcatctgtcaactacaacagtctcgcaagtg 7342270  T
Q  201 attatttcagttgataagatcatataagtcaatccaaacatgaccgtcagtcgtggagataacaaaactttgatattgtgttaggcattgcagtagcata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7342271 attatttcagttgataagatcatataagtcaatccaaacatgaccgtcagtcctggagataacaaaactttgatattgtgttaggcattgcagtagcata 7342370  T
Q  301 tggtatgt 308  Q
    ||||||||    
T  7342371 tggtatgt 7342378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 4191663 - 4191736
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaa-taaagtcaaactgttttcataag 116  Q
    |||||| ||||||||||||||||||||  || ||| || ||||||||||| |||||||||||||||||||||||    
T  4191663 ttatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttcataag 4191736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 485978 - 486073
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaat-aaagtcaaactgttttc 111  Q
    ||||||||| |||||||| |||| ||||||||| | ||||||||||||||| ||  || ||| || |||||||||||| ||||||||| |||||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaaaagataaaataaaagtcaaattgttttc 486073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 30024587 - 30024694
Alignment:
Q  7 cataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactg 106  Q
    ||||||||  ||||||||||| |||||||| || || |||||| |||||| |||||| |||||   || ||| || ||||||||||||||||| ||| ||    
T  30024587 cataaacaacttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattg 30024686  T
Q  107 ttttcata 114  Q
    ||||||||    
T  30024687 ttttcata 30024694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 19304816 - 19304918
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  |||||||| |||||||  ||||||||||| ||| |||||||||||||| |||||  || ||  |||||||||||  ||||||||||| |||    
T  19304816 ataaacaacttaattaaatgcttatgctataaacgcttctcatataagtgcttatgtttaagctattgctttaataaaagatatgataaagtcaaattgt 19304915  T
Q  108 ttt 110  Q
    |||    
T  19304916 ttt 19304918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 24443938 - 24444032
Alignment:
Q  20 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||||||| |||| | ||||||| |||||| |||||||||||||  || |||||| |||| |||||||||| ||||||  ||||||||    
T  24443938 attaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcata 24444032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 36734817 - 36734887
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||||||||||||||||| | ||| ||| || ||||| ||||||||||||||||| ||||||||    
T  36734817 ttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactattttcata 36734887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 969494 - 969433
Alignment:
Q  41 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 102  Q
    ||||||||| |||||||||||| |||||||| || ||| |||||||| ||||||||||||||    
T  969494 cgcttatcatataagtgcttatctataagcaatttctataataaaaggtaaaataaagtcaa 969433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 8703795 - 8703696
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaag--tcaaactgttttcata 114  Q
    |||||||||||||||||  |||||  |||||||||| |||||||||||||||||  || ||  || ||| ||||||| ||||  ||||||||||||||||    
T  8703795 ttaattaagtgcttataacataaatacttatcagatgagtgcttatgtataagctatttctctaacaaaggataaaaaaaagtatcaaactgttttcata 8703696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 23676604 - 23676707
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaat-aaaagataaaataaagtcaaactg 106  Q
    ||||||| ||||| |||||||||||||  |||| |||| ||| |||||||||| ||||||| |  ||  |||||| |||||||||||||||||| ||||     
T  23676604 ataaacaatttaactaagtgcttatagcttaaatgcttgtcatataagtgcttttgtataatctatttatacaataaaaagataaaataaagtcgaacta 23676703  T
Q  107 tttt 110  Q
    ||||    
T  23676704 tttt 23676707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 54325184 - 54325113
Alignment:
Q  43 cttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| |||||||||| ||||||| |  || |||  | ||||||||||||||||||||||||||||||||    
T  54325184 cttatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcata 54325113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 22684698 - 22684592
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  |||||||| ||||||||  |||  ||||||||| |||| ||||| |||||||||  || ||| || ||| | ||||||||||||||| |||    
T  22684698 ataaacaacttaattaattgcttataccatatgcgcttatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaagtcaaattgt 22684599  T
Q  108 tttcata 114  Q
    |||||||    
T  22684598 tttcata 22684592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 54414837 - 54414899
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    |||||||  ||||||||||| ||||  ||||| ||||||||| ||||||||||||||||||||    
T  54414837 ataaacaacttaattaagtgtttatgttataagcgcttatcatataagtgcttatgtataagc 54414899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 33640996 - 33641053
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgta 65  Q
    |||||||  |||||||||||||||||| |||| ||||||||| |||||||||| ||||    
T  33640996 ataaacagcttaattaagtgcttatagaataatcgcttatcatataagtgcttttgta 33641053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 47970249 - 47970310
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttca 112  Q
    ||||||||||||||||||||  || ||| || |||||||||||| |||||||||| ||||||    
T  47970249 ataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 51044597 - 51044532
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaac-tgttttcataag 116  Q
    |||||| ||||||||||||  || ||| || |||||||||||||||||||||| ||||||||||||    
T  51044597 taagtgtttatgtataagctatttctataacaaaagataaaataaagtcaaacttgttttcataag 51044532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 51556013 - 51555956
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 101  Q
    |||||| ||||||||||||||||||||  ||| || || |||||||||||||||||||    
T  51556013 ttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagtca 51555956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 24160648 - 24160572
Alignment:
Q  37 taaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcat 113  Q
    ||||||||||||| ||||||||||||  ||||||  || ||| || ||||||||| ||||| ||||||| |||||||    
T  24160648 taaacgcttatcatataagtgcttataaataagctttttctataacaaaagataatataaattcaaactattttcat 24160572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 9680595 - 9680658
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||| |||||||||||||||  || | | |||||||||||||||||||||||| |||| |||||    
T  9680595 ataaatgcttatgtataagctatttcgataataaaagataaaataaagtcaaattgttctcata 9680658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 154
Target Start/End: Original strand, 23819123 - 23819154
Alignment:
Q  123 tatagaaataagatgaaaacaacttatggaca 154  Q
    ||||||||||||||||||||||||||||||||    
T  23819123 tatagaaataagatgaaaacaacttatggaca 23819154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 44319873 - 44319943
Alignment:
Q  43 cttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| ||||||||| |||||||| |  || ||| || |||||||||||||||||| |||||||||||||    
T  44319873 cttatcatataagtgctcatgtataaactatttctataa-aaaagataaaataaagtcgaactgttttcata 44319943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 5219646 - 5219576
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| ||||||||| ||||||| ||  |  ||| |||||||||||||||||||| ||||| ||||||||    
T  5219646 ttatcatataagtgctcatgtatatgctatctctataataaaagataaaataaagttaaactattttcata 5219576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 24193493 - 24193579
Alignment:
Q  28 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| |||||||||||||| |||||| ||||||||||||   ||  ||||| |||| |||||| | ||| ||||| ||||||||    
T  24193493 cttatagcataaacgcttatcatataagtacttatgtataagttatttttacaacaaaatataaaacagagttaaactattttcata 24193579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 31038981 - 31038943
Alignment:
Q  76 ctacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  31038981 ctacaataatagataaaataaagtcaaattgttttcata 31038943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 4243228 - 4243289
Alignment:
Q  8 ataaacattttaattaagtgctta-tagtataaacgcttatcagataagtgcttatgtataa 68  Q
    |||||||  ||||||||||||||| ||| |||| ||||||||| |||||||||| |||||||    
T  4243228 ataaacagcttaattaagtgcttattagcataagcgcttatcatataagtgcttgtgtataa 4243289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 7731701 - 7731766
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||| || |||||||||  || ||| |||||||||  ||||||||| ||||||||||||||||    
T  7731701 ataagtgtttgtgtataagctatttctataataaaagactaaataaagttaaactgttttcataag 7731766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 8423019 - 8422926
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 101  Q
    |||||||  ||||||||||| |||||| |||| |   ||||| ||| ||||||||||||||||  ||  || || |||||||||||||||||||    
T  8423019 ataaacaacttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagtca 8422926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 19422339 - 19422412
Alignment:
Q  41 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| |||| ||||||||||||||   || ||| || |||||||| |||||||||||||  ||||||||    
T  19422339 cgcttatcatataaatgcttatgtataagttatttctataacaaaagatataataaagtcaaacatttttcata 19422412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 36048415 - 36048456
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatca 49  Q
    |||| |||||||||||||||||||||| ||||| ||||||||    
T  36048415 ataagcattttaattaagtgcttatagcataaatgcttatca 36048456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 6987880 - 6987820
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    |||||| ||||||||||| |  ||| || | |||||||||||| |||||||||||||||||    
T  6987880 ataagtacttatgtataaactattattatagtaaaagataaaacaaagtcaaactgttttc 6987820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 19691349 - 19691401
Alignment:
Q  62 tgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||  || ||| |||||||| |||||||||||||| |||||||||||    
T  19691349 tgtataagctatttctataataaaagttaaaataaagtcaacctgttttcata 19691401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 19701934 - 19701986
Alignment:
Q  62 tgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||  || ||| |||||||| |||||||||||||| |||||||||||    
T  19701934 tgtataagctatttctataataaaagttaaaataaagtcaacctgttttcata 19701986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 20907104 - 20907164
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    ||||||| ||||||||||||  ||  || || ||||||||||||||||| |||||||||||    
T  20907104 ataagtgtttatgtataagctatttgtataagaaaagataaaataaagtgaaactgttttc 20907164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 24929456 - 24929488
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcataa 115  Q
    |||||||||||||||||| ||||||||||||||    
T  24929456 aaaagataaaataaagtctaactgttttcataa 24929488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 25548717 - 25548649
Alignment:
Q  2 gctttcataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    ||||| ||||||| |||||||||| | |||||| | |||| |||| || ||||||||||||| ||||||    
T  25548717 gctttgataaacaatttaattaagggattatagcagaaacacttaccacataagtgcttatgcataagc 25548649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 32724037 - 32724113
Alignment:
Q  38 aaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||| ||| || ||||||||||| ||| |  || |||  | ||||||||||||||||||||||| ||||||||    
T  32724037 aaacgcttctcatatcagtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcata 32724113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 44019444 - 44019504
Alignment:
Q  41 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 101  Q
    |||||||||||||||||  |||||||| ||  || ||| || |||||||||||||||||||    
T  44019444 cgcttatcagataagtgtgtatgtataggctatttctataagaaaagataaaataaagtca 44019504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 50396646 - 50396709
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||||||||||||||||  |||||| || | || ||||| ||| |||||||||||||||||||    
T  50396646 taagtgcttatgtataagctattactaaaacataatataaattaa-gtcaaactgttttcataag 50396709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 41052778 - 41052885
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||  || | | |||||||||| ||||||| | |||||||    
T  41052778 ataaacaatttaattaagtgcttgtagcataaacgcttatcagacaggtgcttatgtataagctttttcaataataaaagatcaaataaacttaaactgt 41052877  T
Q  108 tttcataa 115  Q
    ||||||||    
T  41052878 tttcataa 41052885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 20982305 - 20982211
Alignment:
Q  20 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||| ||||  |||||||| ||||||||||||||||||||  || ||| || ||| |||||||||||||||| | |||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtcaacccgttttcata 20982211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 26516186 - 26516275
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaa 97  Q
    |||||||  ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||  || ||| || |||||||||||||||    
T  26516186 ataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 6738590 - 6738484
Alignment:
Q  7 cataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactg 106  Q
    |||||||  |||||||||| | |||||| |||||| ||||||| |||||| |||||||||||||  || | | ||||||||| |||||||||||||| |     
T  6738590 cataaaccgtttaattaagagtttatagcataaacacttatcatataagtacttatgtataagctatttcaataataaaagacaaaataaagtcaaattc 6738491  T
Q  107 ttttcat 113  Q
    |||||||    
T  6738490 ttttcat 6738484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 29115395 - 29115302
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 101  Q
    ||||||| |||||||| | |||||||| ||||||  |||||| | ||||||||||||||||||  || |||||| ||||| |||||||||||||    
T  29115395 ataaacactttaattacgcgcttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtca 29115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 37063236 - 37063150
Alignment:
Q  28 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| ||||| |||| ||| |||| ||||||||||||| |  || ||| || ||||||||||||||||||||||| ||||||||    
T  37063236 cttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcata 37063150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 16945155 - 16945076
Alignment:
Q  18 taattaagtgcttatagtataaacgcttatcag--ataagtgcttatgtataagcacttactacaataaaagataaaata 95  Q
    |||||||||| |||||| ||||| ||||||||   ||||||||||||||||||||  || |||||| |||||||||||||    
T  16945155 taattaagtgtttatagcataaaagcttatcatgtataagtgcttatgtataagctatttctacaagaaaagataaaata 16945076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 7096264 - 7096201
Alignment:
Q  53 aagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||||||||||||||  || ||| || ||||||||||||||||||||||  ||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaaccattttcataag 7096201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 9860972 - 9860874
Alignment:
Q  16 tttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||| | | || ||| ||||||  ||||||||||||  || ||| || ||| || |||||||| |||||| |||||||||    
T  9860972 tttaattaagtgcttatagtatatatggttgtcatataagttattatgtataagctatttctagaacaaatgacaaaataaaatcaaaccgttttcata 9860874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 19177403 - 19177473
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||||||||||||||||| |  || |||||| | |||||||||| ||||| |||||||||||||    
T  19177403 ttatcatataagtgcttatgtataaactatttctacaacagaagataaaattaagtctaactgttttcata 19177473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 32172551 - 32172635
Alignment:
Q  18 taattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 102  Q
    |||||||| ||||| || |||| ||||||||| | ||| |||||||||||| |  || |||||| |||||||||||| |||||||    
T  32172551 taattaagcgcttacagcataagcgcttatcatacaagagcttatgtataaactatttctacaacaaaagataaaatgaagtcaa 32172635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 35135810 - 35135738
Alignment:
Q  42 gcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||| || ||||||| |||||||||||   || ||| || ||||||||||||||||||||||| ||||||||    
T  35135810 gcttaacatataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcata 35135738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 37611372 - 37611267
Alignment:
Q  9 taaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtt 108  Q
    |||||| ||||||||||  ||||||| ||||| | || ||| ||||||||||||||| ||||  || ||| ||||||||  ||||| || ||||| ||||    
T  37611372 taaacaatttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataataaaag--aaaatcaaatcaaattgtt 37611275  T
Q  109 ttcataag 116  Q
    ||||||||    
T  37611274 ttcataag 37611267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 37788102 - 37787997
Alignment:
Q  9 taaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtt 108  Q
    |||||| ||||||||||  ||||||| ||||| | || ||| ||||||||||||||| ||||  || ||| ||||||||  ||||| || ||||| ||||    
T  37788102 taaacaatttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataataaaag--aaaatcaaatcaaattgtt 37788005  T
Q  109 ttcataag 116  Q
    ||||||||    
T  37788004 ttcataag 37787997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 39257568 - 39257472
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaac 104  Q
    |||||||  ||||||||| |||||||| ||||||  ||||||  |||||||||||||||| ||  |  ||| || ||||| ||||||||||||||||    
T  39257568 ataaacaacttaattaagcgcttatagcataaactattatcatgtaagtgcttatgtatatgctatctctataacaaaaggtaaaataaagtcaaac 39257472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 14295469 - 14295500
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||||||||||||    
T  14295469 aaaagataaaataaagtcaaactgttttcata 14295500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 114
Target Start/End: Complemental strand, 28586873 - 28586842
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||||||||||||    
T  28586873 aaaagataaaataaagtcaaactgttttcata 28586842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 6739760 - 6739858
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactg 106  Q
    ||||||| || || ||||||||||||  |||| || |||||| ||||| | |||||||||||   || ||| ||  |||||||||||||||||||||||    
T  6739760 ataaacaattgaactaagtgcttatatcataagcgtttatcatataagcgtttatgtataagtcatttctataaataaagataaaataaagtcaaactg 6739858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 29588778 - 29588856
Alignment:
Q  18 taattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataa 96  Q
    |||||||| |||||||| |||||| ||| | | ||||||||||||||||||||  || ||| || |||| |||||||||    
T  29588778 taattaagcgcttatagcataaacactttttatataagtgcttatgtataagctatttctataacaaaatataaaataa 29588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 38831565 - 38831535
Alignment:
Q  81 ataaaagataaaataaagtcaaactgttttc 111  Q
    |||||||||||||||||||||||||||||||    
T  38831565 ataaaagataaaataaagtcaaactgttttc 38831535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 41277456 - 41277426
Alignment:
Q  84 aaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||||||||||||||||||||    
T  41277456 aaagataaaataaagtcaaactgttttcata 41277426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 583878 - 583849
Alignment:
Q  85 aagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||||||||||    
T  583878 aagataaaataaagtcaaactgttttcata 583849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 985596 - 985625
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttca 112  Q
    ||||||||||||||||||||||||||||||    
T  985596 aaaagataaaataaagtcaaactgttttca 985625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 2569883 - 2569822
Alignment:
Q  9 taaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    |||||| |||||||||| |||||||   |||||  |||||| ||||||||||||||||||||    
T  2569883 taaacaatttaattaagcgcttataccgtaaacatttatcatataagtgcttatgtataagc 2569822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 17369309 - 17369354
Alignment:
Q  195 caagtgattatttcagttgataagatcatataagtcaatccaaaca 240  Q
    ||||||||||| ||||| |||||| ||| |||||||||||||||||    
T  17369309 caagtgattatgtcagtagataagttcaaataagtcaatccaaaca 17369354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 32059694 - 32059665
Alignment:
Q  85 aagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||||||||||    
T  32059694 aagataaaataaagtcaaactgttttcata 32059665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 11835192 - 11835268
Alignment:
Q  36 ataaacgcttatca-gataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    |||||||||||||| |||||||| |||||||||| |  ||  || || ||||||||||||||||| ||| |||||||    
T  11835192 ataaacgcttatcatgataagtgtttatgtataaaccatttttataacaaaagataaaataaagttaaattgttttc 11835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 29117037 - 29117009
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttc 111  Q
    |||||||||||||||||||||||||||||    
T  29117037 aaaagataaaataaagtcaaactgttttc 29117009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 31694440 - 31694508
Alignment:
Q  42 gcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||| ||||||||||||| ||||||  |  ||| || |||| ||||| |||||||||||||||||    
T  31694440 gcttatcatataagtgcttatgaataagctatgtctataacaaaacataaactaaagtcaaactgtttt 31694508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 33961600 - 33961652
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 69  Q
    ||||||||||| ||||||||||| | ||||||| ||||||| || ||||||||    
T  33961600 ttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataag 33961652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 35095932 - 35095864
Alignment:
Q  41 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttt 109  Q
    ||||||||| |||||||||||| | ||| |  || ||| || ||||||||||||||||||||| |||||    
T  35095932 cgcttatcatataagtgcttatatttaaactatttctataacaaaagataaaataaagtcaaattgttt 35095864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 1256 - 1150
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  |||||||||| ||||||| |||||||  ||||| ||||||||||||||||||||  || ||| || ||||||||||||||||||||||| |    
T  1256 ataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactat 1157  T
Q  108 tttcata 114  Q
    | |||||    
T  1156 tctcata 1150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 2719 - 2825
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  |||||||||| ||||||| |||||||  ||||| ||||||||||||||||||||  || ||| || ||||||||||||||||||||||| |    
T  2719 ataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactat 2818  T
Q  108 tttcata 114  Q
    | |||||    
T  2819 tctcata 2825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 9027465 - 9027567
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    ||||||| ||||| |||| |||||||| || ||| ||||| | |||||||||||| |||||||  || |||||||| |||||||||||||||||||||||    
T  9027465 ataaacagtttaagtaagcgcttatagcatgaacacttattatataagtgcttatctataagctatttctacaatagaagataaaataaagtcaaactgt 9027564  T
Q  108 ttt 110  Q
    |||    
T  9027565 ttt 9027567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 2514610 - 2514687
Alignment:
Q  28 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaact 105  Q
    ||||||| ||||| ||||||||  |||||||||||||||||||  || ||| ||||||||||||||||||||||||||    
T  2514610 cttatagcataaatgcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtcaaact 2514687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 33068734 - 33068639
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttca 112  Q
    ||||||||||| |||||| |||| ||||||||| |||| ||||||||||||||   || ||| || ||||||||||||||  ||||||||||||||    
T  33068734 ttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaataatatcaaactgttttca 33068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 3217360 - 3217266
Alignment:
Q  20 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||||||  ||  |  || | ||||||||||||||||||| | ||||||||    
T  3217360 attaagtgcttatagtataagcgattatcatataagtgcttatgtataagctatttttgtaagagaagataaaataaagtcaaattattttcata 3217266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 18264231 - 18264323
Alignment:
Q  20 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||  ||  ||  ||||| |||  ||||| |||||||||| ||||||||||    
T  18264231 attaagtgcgtatagtataaacgtttatcatataagtgcttatgtatgtgctatttttacaacaaa--ataaagtaaagtcaaattgttttcata 18264323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 32386270 - 32386179
Alignment:
Q  19 aattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||  ||||||||||||| | |||||| ||||||||||||||||||||  || |    | ||||||||||||||||| ||||||||||    
T  32386270 aattaagcacttatagtataaaagtttatcatataagtgcttatgtataagctatttcacttagaaaagataaaataaagtaaaactgtttt 32386179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 33828534 - 33828596
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||  ||||||| ||||| |||||    
T  33828534 ataaacagtttaactaagtgcttatagcataaacgcttatcatttaagtgcatatgtgtaagc 33828596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 10154146 - 10154215
Alignment:
Q  45 tatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||| |||||||||| |||| ||||  || ||| |  ||||||||||||||||||||||||||||||||    
T  10154146 tatcatataagtgcttctgtacaagctgtttctatagaaaaagataaaataaagtcaaactgttttcata 10154215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 31964710 - 31964669
Alignment:
Q  76 ctacaataaaagataaaataaagtc-aaactgttttcataag 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  31964710 ctacaataaaagataaaataaagtcaaaactgttttcataag 31964669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 32975866 - 32975967
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||||| | |||||| |||| ||||| ||| ||||||| |||||||||||   || ||  || |||| ||||||||||||||||||||    
T  32975866 ataaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagtcaaactgt 32975965  T
Q  108 tt 109  Q
    ||    
T  32975966 tt 32975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 323733 - 323805
Alignment:
Q  42 gcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| | ||||||| || |||||||||  || ||| | |||||||||||||||| ||||||||||||||||    
T  323733 gcttataacataagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcata 323805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 31461575 - 31461651
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaa 93  Q
    ||||||||||||||||| ||||| | |||||   ||||||||||||||||||||  || ||| || |||||||||||    
T  31461575 ttaattaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaaagataaaa 31461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 9732382 - 9732469
Alignment:
Q  26 tgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcat 113  Q
    ||||||||| ||||||  ||| || ||||||||||||| ||||||  || ||| | |||| |||||||| |||||||| |||||||||    
T  9732382 tgcttatagcataaacatttaccatataagtgcttatgcataagctatttctatattaaaggataaaattaagtcaaattgttttcat 9732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 29274376 - 29274305
Alignment:
Q  43 cttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| | || |||||||||||||||  || ||| |  ||||||||||||||||||||| ||||||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcata 29274305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 3204652 - 3204618
Alignment:
Q  80 aataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||| |||||||||||||    
T  3204652 aataaaagataaaataaagtcgaactgttttcata 3204618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 7351769 - 7351684
Alignment:
Q  29 ttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||| | ||||||| |||| ||||||||||||| |  ||  || ||||||  |||||||||||| ||||||||||||||    
T  7351769 ttatagcataagctcttatcatataaatgcttatgtataaactatttatataataaactataaaataaagttaaactgttttcata 7351684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 8349837 - 8349744
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    ||||||||| |||||||| |||| | ||||||| ||||||| || ||||||| |  || ||  || ||||||||||||||||| ||| ||||||    
T  8349837 ttaattaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaagttaaattgtttt 8349744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 8420345 - 8420280
Alignment:
Q  42 gcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||| ||||||||||||||| |||   || ||  |||||| |||||||||||||||||||||    
T  8420345 gcttatcatataagtgcttatgtacaagttatttctttaataaatgataaaataaagtcaaactgt 8420280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 10452505 - 10452436
Alignment:
Q  45 tatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||| || |||||||||||||||||  || ||| || |||| |||||||||| ||||||| ||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcata 10452436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 31672575 - 31672542
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcataag 116  Q
    |||| |||||||||||||||||||||||||||||    
T  31672575 aaaaaataaaataaagtcaaactgttttcataag 31672542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 20672004 - 20671944
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    ||||||| ||||||||||||  || ||| |  ||||||||||||||||||||| |||||||    
T  20672004 ataagtgattatgtataagctatttctagatcaaaagataaaataaagtcaaattgttttc 20671944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 27727237 - 27727165
Alignment:
Q  27 gcttatagtataaacgcttatcagataagtgcttatgtataag-cacttactacaataaaagataaaataaag 98  Q
    ||||||||||||||| ||||||| |||||||||||| || |||  | || ||| ||| |||||||||||||||    
T  27727237 gcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 27727165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 29940729 - 29940789
Alignment:
Q  53 aagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcat 113  Q
    ||||||||| ||||||||  || ||| || ||||||||||||||||||||  |||||||||    
T  29940729 aagtgcttaagtataagctttttctataacaaaagataaaataaagtcaatttgttttcat 29940789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 31968131 - 31968091
Alignment:
Q  76 ctacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||||| || |||||||||||||||||| ||||||||||    
T  31968131 ctacaatagaaaataaaataaagtcaaactattttcataag 31968091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 28803690 - 28803582
Alignment:
Q  6 tcataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaact 105  Q
    ||||||||| |||||||||||| |||| | ||||| |||||||| |||||||||||| ||||||   || | | || |||||||||||||||||||||||    
T  28803690 tcataaacagtttaattaagtgtttatggcataaatgcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaact 28803591  T
Q  106 gttttcata 114  Q
    | |||||||    
T  28803590 gatttcata 28803582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 36852366 - 36852452
Alignment:
Q  21 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    ||||||| || ||| ||||||||||| |||||||||||||||||||||||  || ||  | || |||||||||||||||||||||||    
T  36852366 ttaagtgtttgtagcataaacgcttaccagataagtgcttatgtataagctatttctctattagaagataaaataaagtcaaactgt 36852452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 4550685 - 4550771
Alignment:
Q  28 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| |||| | ||||||| |||||||||||||||||||   || | | ||||||||||||||||| ||||| |||||||||||    
T  4550685 cttatagcataatctcttatcacataagtgcttatgtataagttgtttccataataaaagataaaataacgtcaagctgttttcata 4550771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 10143064 - 10143162
Alignment:
Q  12 acattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||| ||||||||||||||| || | |||  ||||||  |||||||||||||||||||   || ||| || |||||||||||| |||||||||||||||    
T  10143064 acatcttaattaagtgcttacagcacaaaaacttatcgaataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttt 10143162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 32098493 - 32098382
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagata---agtgcttatgtataagcacttactacaataaaagataaaataaagtcaaac 104  Q
    |||||||  ||| |||||||||||||| ||||||  |||||| |||   | ||||||| |||||||  || ||| || |||||||||||||||||||||     
T  32098493 ataaacaacttacttaagtgcttatagcataaacagttatcatatactaaatgcttatatataagctatttctataacaaaagataaaataaagtcaaag 32098394  T
Q  105 tgttttcataag 116  Q
    ||||||||||||    
T  32098393 tgttttcataag 32098382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 33192090 - 33192187
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| ||||| || |||||| ||||||| | |||||||||| || || |  || ||| || | ||||||||||||||||||||||||||||||    
T  33192090 ttaattaagcgcttaaagcataaactcttatcacacaagtgcttatataaaaactatttctataacataagataaaataaagtcaaactgttttcata 33192187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 17952848 - 17952777
Alignment:
Q  43 cttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| ||||| |||||| |||||||  || ||| || ||||||||||||||||||||||| ||||||||    
T  17952848 cttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcata 17952777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 33197393 - 33197327
Alignment:
Q  36 ataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 102  Q
    |||||||||||||| |||||||||||| |||||||  || ||| || |||||||| |||||||||||    
T  33197393 ataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 34055075 - 34054977
Alignment:
Q  21 ttaagtgcttatagtataaacgcttatcaga-----taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||| ||||||| |||||| |     |||||||||||||||| ||  || ||| || |||||||||||||||| |||||||||| ||||    
T  34055075 ttaagtgcttatagcataaacggttatcataattcataagtgcttatgtataggctatttctataacaaaagataaaataaaggcaaactgtttacata 34054977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 11513824 - 11513892
Alignment:
Q  43 cttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| ||||| | |||||||||||   ||| ||||| ||||||||||||||||||||| ||||||||||    
T  11513824 cttatcatataagggtttatgtataag---ttattacaacaaaagataaaataaagtcaaattgttttcata 11513892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 22878194 - 22878250
Alignment:
Q  185 aacagtctcgcaagtgattatttcagttgataagatcatataagtcaatccaaacat 241  Q
    ||||||||| |||||| |||| ||||| |||||| ||| ||||||||||||||||||    
T  22878194 aacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaacat 22878250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 25609727 - 25609778
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 102  Q
    ||||||||||||||||||||  || ||| || ||||||||||||||||||||    
T  25609727 ataagtgcttatgtataagctatttctataagaaaagataaaataaagtcaa 25609778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 31461326 - 31461421
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaa 103  Q
    |||||||  |||||||||  ||| ||| |||||||  ||||| ||||||| |||| |||||||  || ||| || |||||||||||||||||||||    
T  31461326 ataaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 44589941 - 44589984
Alignment:
Q  27 gcttatagtataaacgcttatca-gataagtgcttatgtataag 69  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  44589941 gcttatagtataagcgcttatcatgataagtgcttatgtataag 44589984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 5043666 - 5043636
Alignment:
Q  84 aaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||||||||||||||||||||    
T  5043666 aaagataaaataaagtcaaactgttttcata 5043636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 6926612 - 6926518
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||| || |||||||||||||  ||||||||| |||| || |||||||||||   ||  ||||| |||||||||||| |||||||| ||||||||||    
T  6926612 ttaatcaattgcttatagtata--cgcttatcatataaatgtttatgtataagtcatttgtacaagaaaagataaaat-aagtcaaattgttttcata 6926518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 7282950 - 7283076
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataa---------gagagtctatagaaataagatgaaaac 142  Q
    |||||| ||||||||||||  ||  || || |||||| ||||| ||||||||||||||||||||         |||||  ||| || |||||||||||||    
T  7282950 taagtgtttatgtataagctatttttataagaaaagaaaaaatgaagtcaaactgttttcataagctatgtgggagagcttatggatataagatgaaaac 7283049  T
Q  143 aacttatggacacattataacttgttt 169  Q
    |||||||||||| || |||| ||||||    
T  7283050 aacttatggacatatcataagttgttt 7283076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 14209193 - 14209271
Alignment:
Q  36 ataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| |||||| ||||||| || ||| |||||  || | | || ||||||||||||||| ||||||||||||||||    
T  14209193 ataaacgtttatcatataagtgtttctgtctaagctatttcaataacaaaagataaaataaattcaaactgttttcata 14209271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 18962176 - 18962114
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||| |||  ||  || || ||||||||||||||||| ||||||||||||||    
T  18962176 taagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcata 18962114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 25790037 - 25790120
Alignment:
Q  29 ttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||| ||||||||| ||||||  ||||||||||    || ||| || |||||||||| | |||||||||||||||||||    
T  25790037 ttatagtataagcgcttatcatataagt--ttatgtataatatatttctataaaaaaagataaagtgaagtcaaactgttttcata 25790120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 27288564 - 27288622
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttt 109  Q
    ||||||||||||||| |||   || ||| |||||||||||||||||| |||||||||||    
T  27288564 ataagtgcttatgtaaaagttgtttctataataaaagataaaataaaatcaaactgttt 27288622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 33942113 - 33942143
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcat 113  Q
    |||||||||||||||||||||||||||||||    
T  33942113 aaaagataaaataaagtcaaactgttttcat 33942143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 43808472 - 43808526
Alignment:
Q  16 tttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    |||||||||||| |||||| |||| ||| ||||| ||||||| ||||||||||||    
T  43808472 tttaattaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagc 43808526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 13189560 - 13189507
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    ||||||||||| ||||||||| ||| |||||||  ||||||||| |||||||||    
T  13189560 ttaattaagtggttatagtattaacacttatcatgtaagtgcttttgtataagc 13189507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 29429864 - 29429835
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttca 112  Q
    ||||||||||||||||||||||||||||||    
T  29429864 aaaagataaaataaagtcaaactgttttca 29429835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 41949966 - 41950015
Alignment:
Q  21 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||| ||||    
T  41949966 ttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagc 41950015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 33256706 - 33256734
Alignment:
Q  86 agataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||||||||||||||||||    
T  33256706 agataaaataaagtcaaactgttttcata 33256734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 37844895 - 37844847
Alignment:
Q  21 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 69  Q
    |||||||||||||| ||||| |||||||| ||||||| |||| ||||||    
T  37844895 ttaagtgcttatagcataaaagcttatcatataagtgtttatctataag 37844847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 20672669 - 20672768
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||||| | |||||||| ||| |||||||| |||||||||||||| || || |||  || || |||||||||||||||||||||||||||| |||||    
T  20672669 ttaattaagagtttatagtagaaaagcttatcatataagtgcttatgtgtatgccctttatataacaaaagataaaataaagtcaaactgtttttataag 20672768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 14482090 - 14482192
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    ||||||| ||||||||||| ||||||| || |  |||||||| |||||||||||||||||| |  || ||| || ||||||||||||||||||||| |||    
T  14482090 ataaacaatttaattaagttcttatagcattagtgcttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtcaaattgt 14482189  T
Q  108 ttt 110  Q
    |||    
T  14482190 ttt 14482192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 10079245 - 10079142
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    ||||||| |||||| ||||||||||| |||||| |||| ||| |||  ||||||| |||| ||  || |||  |||||||||||||| ||||||||||||    
T  10079245 ataaacagtttaatcaagtgcttatattataaatgcttttcatatacatgcttatttataggctatttctatgataaaagataaaatgaagtcaaactgt 10079146  T
Q  108 tttc 111  Q
    ||||    
T  10079145 tttc 10079142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 27320206 - 27320300
Alignment:
Q  10 aaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaact 105  Q
    ||||| |||||||||| |||||||| |||||| ||||||| ||||||||||| ||||||||  || ||| |  ||||||| |||||||||||||||    
T  27320206 aaacaatttaattaagcgcttatagcataaacacttatcacataagtgcttacgtataagctattcctatagcaaaagat-aaataaagtcaaact 27320300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 4558686 - 4558792
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||| | |||||||| ||||||| |||| |  |||||| ||||||||||||  || ||| |||||||||||||||||||| ||| | |    
T  4558686 ataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaattat 4558785  T
Q  108 tttcata 114  Q
    |||||||    
T  4558786 tttcata 4558792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 27754606 - 27754556
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtata 67  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  27754606 ttaattaagtgtttatagtataaacgcttatcatttaagtgcttatgtata 27754556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 35453805 - 35453699
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||||||| |||||| |||| ||||| ||| |||||| ||||| ||||| |  || |||||| ||||||||||||||||| |||||      
T  35453805 ataaacaacttaattaagtgattatagcataagcgcttgtcatataagtacttatatataatctgtttctacaacaaaagataaaataaagttaaactag 35453706  T
Q  108 tttcata 114  Q
    |||||||    
T  35453705 tttcata 35453699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 35535007 - 35534941
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||| |||||||||||| |||||||  || ||| |||||||| ||||||||||||||||||||||    
T  35535007 ttatcatataagtgcttatatataagctatttctataataaaagttaaaataaagtcaaactgtttt 35534941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 35869737 - 35869831
Alignment:
Q  20 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||||||| |||| | ||||||| |||||| |||||||||||||  || |||||| |||| |||||||||| ||||||  ||||||||    
T  35869737 attaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcata 35869831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 40280376 - 40280279
Alignment:
Q  19 aattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||| |||||||| |  | ||||||||| |||||||| ||| ||||||   || |||||| ||||||||||||||||| ||| ||||||||||||    
T  40280376 aattaagcgcttatagcaatagcgcttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagtaaaattgttttcataag 40280279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 43208315 - 43208253
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    |||||||  |||||||||||||||||||||||||| | |||| ||||||  ||||||||||||    
T  43208315 ataaacaacttaattaagtgcttatagtataaacgttcatcatataagtatttatgtataagc 43208253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 14929255 - 14929190
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||||||| | ||||||  || ||| ||||||||| |||||| ||||||||||||||||||||    
T  14929255 ataagtgcttacgcataagctatttctataataaaagacaaaatagagtcaaactgttttcataag 14929190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 29699155 - 29699247
Alignment:
Q  21 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcat 113  Q
    |||||||||||||| |||||   |||||| |||| |||||||||| |||   || ||| || ||||||||||||||||||||| |||| ||||    
T  29699155 ttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaaaatgttgtcat 29699247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 4271836 - 4271875
Alignment:
Q  9 taaacattttaattaagtgcttatagtataaacgcttatc 48  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  4271836 taaacagtttaattaagtgcttatagtataaatgcttatc 4271875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 6918289 - 6918258
Alignment:
Q  80 aataaaagataaaataaagtcaaactgttttc 111  Q
    ||||||||||||||||||||||||||||||||    
T  6918289 aataaaagataaaataaagtcaaactgttttc 6918258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 6950224 - 6950271
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataag 55  Q
    |||||||  |||||||||||||||||| |||||||||||||| |||||    
T  6950224 ataaacaacttaattaagtgcttatagcataaacgcttatcatataag 6950271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 34563138 - 34563245
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||||  |||||||| ||||||  |||||| |||||||||||| ||||||   || |||  | ||| ||||||||||||||||||  |    
T  34563138 ataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagtcaaacaat 34563237  T
Q  108 tttcataa 115  Q
    ||||||||    
T  34563238 tttcataa 34563245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 40357815 - 40357894
Alignment:
Q  36 ataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataa 115  Q
    ||||| |||||||| ||||||  |||||||||||| |||  || || ||||||||||||||||| ||| | |||||||||    
T  40357815 ataaatgcttatcatataagtatttatgtataagctcttgatataacaaaagataaaataaagtaaaattattttcataa 40357894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 39392822 - 39392744
Alignment:
Q  29 ttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||| ||||  |||||||| |||||||  ||||||||| |  || ||| || |||||||||||||||||||||||||    
T  39392822 ttatagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaagtcaaactgt 39392744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 40356788 - 40356854
Alignment:
Q  37 taaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaa 103  Q
    ||||| ||| ||| |||||||||||| |||||||  ||  || ||||||||||||||||||||||||    
T  40356788 taaacacttgtcatataagtgcttatctataagctatttatataataaaagataaaataaagtcaaa 40356854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 41336827 - 41336721
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  |||||||| ||||||||| |||| || |||||| |||| |||||||||||||    ||  ||  | ||||||||||||| ||||||| |||    
T  41336827 ataaacaacttaattaattgcttatagcataagcgtttatcaaataaatgcttatgtataaatcatttttatgacaaaagataaaatatagtcaaattgt 41336728  T
Q  108 tttcata 114  Q
    |||||||    
T  41336727 tttcata 41336721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 42597332 - 42597394
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcat 113  Q
    |||||| |||||||||||||  || ||| || ||||||||||||||||| ||| |||||||||    
T  42597332 ataagtacttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcat 42597394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 43907907 - 43907873
Alignment:
Q  82 taaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||||||||||||||||||| ||||||||||||    
T  43907907 taaaagataaaataaagtcaaattgttttcataag 43907873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 1112218 - 1112251
Alignment:
Q  81 ataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| ||||||||||||||||||||||||    
T  1112218 ataaaagatcaaataaagtcaaactgttttcata 1112251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12972753 - 12972806
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    ||||||||| |||||||| |||| |  |||||| ||||||||||||||||||||    
T  12972753 ttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagc 12972806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 14949812 - 14949884
Alignment:
Q  44 ttatcagataagtgcttatgtataagc-acttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||| | |||| ||||||||||||| |||| ||| || ||||||||||||| ||||||||| ||||||||||    
T  14949812 ttatcatacaagttcttatgtataagctactt-ctataacaaaagataaaatagagtcaaactcttttcataag 14949884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 26215426 - 26215487
Alignment:
Q  50 gataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    |||||| ||||||||||||||  || ||| || ||||||||||||||||| ||||| |||||    
T  26215426 gataagcgcttatgtataagctatttctataacaaaagataaaataaagttaaactattttc 26215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 34290800 - 34290841
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatca 49  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  34290800 ataaacattttaattaagtgcttataatgtaaatgcttatca 34290841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 36644030 - 36643945
Alignment:
Q  31 atagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||||| ||||||| | ||| ||   |||||||||||  || ||| ||||||||||| | |||||||||||| ||||||||||    
T  36644030 atagtataagcgcttataatatacgtatctatgtataagctatttctataataaaagatacagtaaagtcaaactattttcataag 36643945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 37444555 - 37444494
Alignment:
Q  50 gataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    |||||| ||||||||||||||  |||||| || |||||||||| |||||| ||| |||||||    
T  37444555 gataagcgcttatgtataagctattactataacaaaagataaagtaaagttaaattgttttc 37444494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 12496575 - 12496627
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 69  Q
    ||||||||||| |||||| || ||||||||||| |||||| | ||||||||||    
T  12496575 ttaattaagtgtttatagcattaacgcttatcatataagtacgtatgtataag 12496627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 40728566 - 40728498
Alignment:
Q  42 gcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||| ||||||| | ||| |||||   || ||| || ||||||||||||||||||||||||||||    
T  40728566 gcttatcatataagtgttcatgcataagttatttctataacaaaagataaaataaagtcaaactgtttt 40728498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 9527260 - 9527166
Alignment:
Q  20 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| |||||||||||| ||||||| | |||||||||| |||| ||  |  ||| || |||||||| |||||||||||||||||||||||    
T  9527260 attaagtgcctatagtataaacacttatcatacaagtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcata 9527166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 7244626 - 7244698
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||| ||||||||||||||||||||  || ||| |  ||||||||||| ||||||||||||||||||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcataag 7244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 3610894 - 3610820
Alignment:
Q  36 ataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||| ||| ||| ||||||||||||||||||||  || |||||| |||||||||||| ||| |||||||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgtttt 3610820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 30133950 - 30134040
Alignment:
Q  19 aattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    |||||| ||||||||| |||| |||||||||  |||||| ||||||||||||  ||  ||||| ||||||||||||||||||||  |||||||    
T  30133950 aattaaatgcttatagcataagcgcttatca--taagtgtttatgtataagctatttttacaacaaaagataaaataaagtcaacttgttttc 30134040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 45593891 - 45593795
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||||| || |||  | |||||| |||| |||||||||||||||  || ||  || |||| |||||||||||||||||||||||||||    
T  45593891 ttaattaagtgcttat-gtgtaagagtttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcata 45593795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 5006639 - 5006585
Alignment:
Q  60 tatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||  || ||| || ||||||||||||||||||||||||||||||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcata 5006585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 12835107 - 12835013
Alignment:
Q  20 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||||||  ||||||||||| |  || |||||||||| | | ||  || |||||| ||||||||||||||||||||| ||||||||||    
T  12835107 attaagcgcttataacataaacgcttagcgtatgagtgcttatgcagatgctatttctacaacaaaagataaaataaagtcaaattgttttcata 12835013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 25660063 - 25659958
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    ||||||| |||||||||    |||||||||||||  |||||| ||||||||||||||||||   ||| | | || ||||||||||| ||||| |||||||    
T  25660063 ataaacagtttaattaaacatttatagtataaacaattatcacataagtgcttatgtataaaatctttc-ataacaaaagataaaacaaagtgaaactgt 25659965  T
Q  108 tttcata 114  Q
    |||||||    
T  25659964 tttcata 25659958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 27121740 - 27121662
Alignment:
Q  36 ataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||| ||||||||| |||| | ||||||||||||   || ||| |||||| ||||||||||||||||| ||||||||||    
T  27121740 ataagcgcttatcatataattccttatgtataagatatttctataataaatgataaaataaagtcaaattgttttcata 27121662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 27481476 - 27481370
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||| |||||||||| ||||| | |||| | ||||||| ||||||||||||  || ||| || ||| |||||||  ||||||||||||    
T  27481476 ataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataagctatttctataacaaaggataaaacgaagtcaaactgt 27481377  T
Q  108 tttcata 114  Q
    || ||||    
T  27481376 ttccata 27481370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 31341082 - 31341180
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactg 106  Q
    |||||||  ||||| ||| |||||| | |||| |||||||||  ||| |||||||||||||||  ||  || || ||||||||||||||||||||||||    
T  31341082 ataaacaacttaatcaagcgcttattgcataagcgcttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagtcaaactg 31341180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 33894555 - 33894616
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||||||||  || ||| || |||||||||||| |||||||||||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcata 33894616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 49060437 - 49060523
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaa 103  Q
    |||||||||  ||||||||||||  |||||||| ||||||  ||||||||||||  || ||| || |||| ||||||||||||||||    
T  49060437 ttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaa 49060523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 35536028 - 35536101
Alignment:
Q  41 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| ||||  ||||||||||||||  || ||| || | ||||||||||||||||||| ||||||||||    
T  35536028 cgcttatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcata 35536101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 47003984 - 47004077
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||||||||||||| | ||| | |||||| ||||||| |||| | |||||  || ||| || || |||||||||||||||||||| ||||    
T  47003984 ttaattaagtgcttatagcaaaaatgtttatcatataagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaactatttt 47004077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 3241366 - 3241438
Alignment:
Q  45 tatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataaga 117  Q
    ||||| |||||||||||| || ||||  || ||| || |||| | ||||||||||||||||||||||||||||    
T  3241366 tatcatataagtgcttatatagaagctatttctataacaaaataaaaaataaagtcaaactgttttcataaga 3241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 30160997 - 30160965
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcataa 115  Q
    |||||||||||||||||||||||||||||||||    
T  30160997 aaaagataaaataaagtcaaactgttttcataa 30160965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 33601207 - 33601167
Alignment:
Q  76 ctacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  33601207 ctacactaaaaaataaaataaagtcaaactgttttcataag 33601167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 28165023 - 28165081
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    ||||||||||||||||||  ||| ||| || |||||||||||| |||||||| ||||||    
T  28165023 taagtgcttatgtataagttctttctataacaaaagataaaatgaagtcaaattgtttt 28165081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 110
Target Start/End: Original strand, 31338468 - 31338498
Alignment:
Q  80 aataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||||||||||||||||||||||||||    
T  31338468 aataaaagataaaataaagtcaaactgtttt 31338498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 22388086 - 22388001
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaa 93  Q
    |||||||  ||||||||| |||||||  |||||| |||||||  |||||||||||| ||||||  || ||| || |||||||||||    
T  22388086 ataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaa 22388001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 29363483 - 29363512
Alignment:
Q  85 aagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||||||||||    
T  29363483 aagataaaataaagtcaaactgttttcata 29363512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 5276156 - 5276216
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttca 112  Q
    |||||||||||||||||||  ||  || || ||||||||| |||||||||||| |||||||    
T  5276156 taagtgcttatgtataagctatttttataacaaaagataacataaagtcaaaccgttttca 5276216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 24973870 - 24973938
Alignment:
Q  46 atcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||| ||||||||||||||| ||||  || ||| || ||||||||||||||| ||||| ||||| ||||    
T  24973870 atcatataagtgcttatgtaaaagctatttctataacaaaagataaaataaattcaaattgtttccata 24973938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 28844383 - 28844435
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 69  Q
    ||||||||||| |||||| |||| |||||||   |||||||||||||||||||    
T  28844383 ttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataag 28844435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 39630509 - 39630569
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataa 68  Q
    |||||||  |||||||||||||||||||  || | |||||||  |||||||||||||||||    
T  39630509 ataaacaacttaattaagtgcttatagtgcaagcccttatcacttaagtgcttatgtataa 39630569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 44239087 - 44239055
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcataa 115  Q
    ||||||||||||||||||||| |||||||||||    
T  44239087 aaaagataaaataaagtcaaaatgttttcataa 44239055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 47616736 - 47616704
Alignment:
Q  84 aaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||| |||||||||||||||||||||||||    
T  47616736 aaagatagaataaagtcaaactgttttcataag 47616704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 38462169 - 38462275
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||||| || || || |||||| ||||||| ||||||| |||| |||||||  || ||| |  |||||||||||||||||||||||||    
T  38462169 ataaacaagttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgt 38462268  T
Q  108 tttcata 114  Q
    |||||||    
T  38462269 tttcata 38462275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 41029013 - 41028929
Alignment:
Q  28 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttca 112  Q
    |||||||  |||| |||||||| ||||||||||||||||||||  || ||| || |||||| ||||||||||||| |||||||||    
T  41029013 cttatagcttaaatgcttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttca 41028929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 20504100 - 20504202
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc-acttactacaataaaagataaaataaagtcaaactg 106  Q
    |||||||  ||||||||| |||||||||||||| ||||||||  ||||||||||||  ||||| |||| ||| || ||| |||||||  |||||||||||    
T  20504100 ataaacagcttaattaagcgcttatagtataaaggcttatcatttaagtgcttatgcctaagctactt-ctataacaaatgataaaaataagtcaaactg 20504198  T
Q  107 tttt 110  Q
    ||||    
T  20504199 tttt 20504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 20192744 - 20192682
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||||||||||||  ||  || || |||||||||||||||||||||| |||||||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcata 20192682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 23785140 - 23785249
Alignment:
Q  7 cataaacattttaattaagtgcttatagtataaacgcttatcagataagt--gcttatgtataagcacttactacaataaaagataaaataaagtcaaac 104  Q
    ||||||||  |||||||||||||||||| ||||| | |||||| |||| |  ||||||| |||||   || |||||  | ||||||||||||||||||||    
T  23785140 cataaacaacttaattaagtgcttatagcataaatgtttatcatataaatatgcttatgcataagttatttctacagcagaagataaaataaagtcaaac 23785239  T
Q  105 tgttttcata 114  Q
    ||| ||||||    
T  23785240 tgtattcata 23785249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 27792796 - 27792866
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| ||||||||||||||||||||  || | | || |||||||||||||| |||||||| ||||||||    
T  27792796 ttatcatataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcata 27792866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 39971210 - 39971315
Alignment:
Q  11 aacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag-cacttactacaataaaagataaaataaagtcaaactgttt 109  Q
    |||| ||||||||||  ||||||  || ||| ||||||| |||||||||||||||||||  ||||| || || |||||||||||||||| |||| |||||    
T  39971210 aacaatttaattaagctcttataacatcaacacttatcatataagtgcttatgtataagttactta-tataacaaaagataaaataaagccaaattgttt 39971308  T
Q  110 tcataag 116  Q
    | |||||    
T  39971309 taataag 39971315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 21574389 - 21574438
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtat 66  Q
    ||||||||||||||||||||||||||||| |||  |||||| ||||||||    
T  21574389 ttaattaagtgcttatagtataaacgcttctcatgtaagtgtttatgtat 21574438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 40122884 - 40122827
Alignment:
Q  58 cttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataa 115  Q
    |||||||||||||  || | | || |||||||||||||||||||||||||||||||||    
T  40122884 cttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcataa 40122827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 51278339 - 51278234
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    ||||||| |||||||||  | ||||| ||||| |  |||||| |||| |||| ||||||||||  || ||| || |||| || |||||||||||||||||    
T  51278339 ataaacagtttaattaaacgtttataatataagcatttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgt 51278240  T
Q  108 tttcat 113  Q
    ||||||    
T  51278239 tttcat 51278234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 12923464 - 12923404
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    |||||||||| |||||||||  || ||  ||||||||||||||||||||||||||| ||||    
T  12923464 ataagtgcttgtgtataagctattgctgtaataaaagataaaataaagtcaaactgctttc 12923404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 21872269 - 21872213
Alignment:
Q  185 aacagtctcgcaagtgattatttcagttgataagatcatataagtcaatccaaacat 241  Q
    ||||||||| |||||| |||| ||||| |||||||||| |||||| |||||||||||    
T  21872269 aacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaacat 21872213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 44284204 - 44284132
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||| |||||| || ||||||||||  || ||| || |||| |||||| ||||||||||||||||||||||    
T  44284204 ttatcatataagtactaatgtataagctatttctataacaaaaaataaaacaaagtcaaactgttttcataag 44284132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 22232749 - 22232820
Alignment:
Q  43 cttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||| |||| |||| ||||||||||  ||  || || ||| ||||||||||||||||||||||||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcata 22232820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 36101476 - 36101559
Alignment:
Q  28 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttc 111  Q
    ||||||| ||| | |||||||| ||||||| ||||| ||||||  || ||  |||| |||||||||||||||||||||| ||||    
T  36101476 cttatagcatacatgcttatcaaataagtggttatgaataagctatttctgtaatataagataaaataaagtcaaactgatttc 36101559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 36646426 - 36646387
Alignment:
Q  115 agagagtctatagaaataagatgaaaacaacttatggaca 154  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  36646426 agagagtttatagaaataagatgaaaacagcttatggaca 36646387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 114
Target Start/End: Complemental strand, 49587023 - 49586992
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||||||||||||    
T  49587023 aaaagataaaataaagtcaaactgttttcata 49586992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 110
Target Start/End: Original strand, 1816543 - 1816573
Alignment:
Q  80 aataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||||||||||||||||||||||||||    
T  1816543 aataaaagataaaataaagtcaaactgtttt 1816573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 28289303 - 28289241
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    ||||||| |||||||||||| || ||| |||||| |||||||  |||||||| ||||||||||    
T  28289303 ataaacagtttaattaagtgtttttagcataaacacttatcatctaagtgctcatgtataagc 28289241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 32555110 - 32555068
Alignment:
Q  61 atgtataagcacttactacaataaaagataaaataaagtcaaa 103  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||    
T  32555110 atgtataagcaattattacaacaaaagataaaataaagtcaaa 32555068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 32703062 - 32703132
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||| || ||||||||||||  || |||  ||||||||||||||||| ||||| ||||||||||    
T  32703062 ttatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcata 32703132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 1395604 - 1395665
Alignment:
Q  53 aagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| |||||||||||  || ||| || ||||||||||||||||||||| | ||||||||    
T  1395604 aagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcata 1395665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 8007828 - 8007771
Alignment:
Q  57 gcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||  || ||| || |||||||||| ||||||||||||||| |||||    
T  8007828 gcttatgtataagctgtttctataacaaaagataaagtaaagtcaaactgttatcata 8007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 29094278 - 29094331
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    ||||||||  |||||||| |||||| ||||||| ||||||| ||||||||||||    
T  29094278 ttaattaaacgcttatagcataaacacttatcatataagtgtttatgtataagc 29094331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 41159026 - 41159091
Alignment:
Q  37 taaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 102  Q
    ||||||||||||  |||||||||||||||||||   || ||| ||  |||||||||||||||||||    
T  41159026 taaacgcttatcgtataagtgcttatgtataagttattcctataactaaagataaaataaagtcaa 41159091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 16790502 - 16790430
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||| ||||||||||||||||||||  ||  || || || |||||||||||| ||||| | ||||||||||    
T  16790502 ttatcatataagtgcttatgtataagctatttttataacaacagataaaataaaatcaaattattttcataag 16790430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 28843033 - 28842977
Alignment:
Q  14 attttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 70  Q
    |||| |||||||  ||||||  |||| ||||||||| ||||||||||||||||||||    
T  28843033 atttaaattaagcacttatatcataagcgcttatcatataagtgcttatgtataagc 28842977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 52450198 - 52450130
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttca 112  Q
    |||||| | |||| |||||| ||||||| || ||| || ||||||| |||||||||||||| |||||||    
T  52450198 ttatcatacaagtacttatgcataagcaatttctataacaaaagatgaaataaagtcaaacagttttca 52450130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 53457340 - 53457372
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcataa 115  Q
    ||||||||||||||||||||||| |||||||||    
T  53457340 aaaagataaaataaagtcaaactattttcataa 53457372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 17420091 - 17420197
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||||||| ||||||||||| |||||| || |||||| ||||||||||| |  ||  || || |||||||||||||||||| |||  |    
T  17420091 ataaacagcttaattaagtgattatagtataagcgcttagcacataagtacttatgtataaactatttttataagaaaagataaaataaagtcgaacaat 17420190  T
Q  108 tttcata 114  Q
    |||||||    
T  17420191 tttcata 17420197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 24263321 - 24263261
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataa 68  Q
    ||||||| ||||||||||||||||||| ||||||| ||| || ||||||| ||||||||||    
T  24263321 ataaacagtttaattaagtgcttatagcataaacgtttagcatataagtgtttatgtataa 24263261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 42550165 - 42550237
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||| | ||||||||||||||||||   | |||| ||||||||||||||||||||||||| ||| ||||||    
T  42550165 ttatcatacaagtgcttatgtataagctagttctacgataaaagataaaataaagtcaaactttttccataag 42550237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 44032145 - 44032075
Alignment:
Q  44 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| ||||||| ||||||||||||  || ||| || ||||| ||||||||||||||| ||||||||||    
T  44032145 ttatcatataagtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcata 44032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 23895233 - 23895330
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||||  |||| || |||| | ||||||| ||||||  ||||||||||||  || ||| || ||||||||||||||| |||||||||| |||||    
T  23895233 ttaattaagcacttaaagcataagcccttatcatataagttattatgtataagctatttctataacaaaagataaaataaattcaaactgttctcata 23895330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 48282029 - 48282125
Alignment:
Q  17 ttaattaagtgcttatagtataaa-cgcttatcagataagtgcttatgtataagcacttactacaata-aaagataaaataaagtcaaactgttttc 111  Q
    |||||||||||||||| |  |||  ||||||||| ||||||||||||||| ||||  || ||| || | |||||||||||||||||||||| |||||    
T  48282029 ttaattaagtgcttattgcttaatgcgcttatcatataagtgcttatgtaaaagctatttctataaaagaaagataaaataaagtcaaactattttc 48282125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 15360857 - 15360888
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||||||||||||||||||||||||    
T  15360857 aaaagataaaataaagtcaaactgttttcata 15360888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 33527286 - 33527223
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||| ||||||| ||||||  || ||| || ||||||||||||| ||||||||||||||||||    
T  33527286 ataagcgcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcata 33527223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 34380364 - 34380439
Alignment:
Q  39 aacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||||| | ||||||||| | ||||||  || ||| || |||||||| |||||||||||||||||| ||||    
T  34380364 aacgcttatcatagaagtgcttaagcataagctatttctaaaacaaaagatacaataaagtcaaactgtttgcata 34380439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 43029537 - 43029482
Alignment:
Q  54 agtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttt 109  Q
    ||||||||||||||| |  || |||||| ||||||||||||||| |||||||||||    
T  43029537 agtgcttatgtataacctatttctacaacaaaagataaaataaattcaaactgttt 43029482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 45999427 - 45999364
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| ||||||||||  || ||| || ||||||||| |||||||||||||| |||||||    
T  45999427 ataagtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcata 45999364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 46499993 - 46499934
Alignment:
Q  51 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||||||| |||||||  || ||| || ||||||||||||||||||||| ||||||    
T  46499993 ataagtgcttatctataagctatttctataagaaaagataaaataaagtcaaattgtttt 46499934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 4549772 - 4549858
Alignment:
Q  27 gcttatagtataaacgcttatca-gataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttca 112  Q
    |||||||| ||||||||||| || ||||| |||||||||| ||||  || ||| || ||||||||||||||||| ||| ||| ||||    
T  4549772 gcttatagcataaacgcttagcacgataaatgcttatgtacaagctatttctataacaaaagataaaataaagttaaattgtcttca 4549858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 12477394 - 12477364
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcat 113  Q
    |||||||||||||||||||||||||||||||    
T  12477394 aaaagataaaataaagtcaaactgttttcat 12477364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 23373438 - 23373364
Alignment:
Q  42 gcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||||| |||| |||||| |||| |||  || ||| |  |||||||||||||||||||| |||||||||||||    
T  23373438 gcttatcatataactgcttacgtattagctatttctatatcaaaagataaaataaagtcaatctgttttcataag 23373364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 27738294 - 27738256
Alignment:
Q  76 ctacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  27738294 ctacaacaaaagataaaataaagtcaaattgttttcata 27738256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 44936772 - 44936666
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  |||||||| |||||||||||||| |||| |||| | || | |||| ||| |||   || ||| || ||||||||| ||||||||||||| |    
T  44936772 ataaacaacttaattaaatgcttatagtataagcgctcatcaaaaaattacttaagtagaagttatttctataacaaaagataagataaagtcaaactat 44936673  T
Q  108 tttcata 114  Q
    |||||||    
T  44936672 tttcata 44936666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 50319230 - 50319288
Alignment:
Q  58 cttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||||||||||  || ||| || ||||||||||||||||||||  ||||||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagtcaagttgttttcataag 50319288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 14737812 - 14737779
Alignment:
Q  83 aaaagataaaataaagtcaaactgttttcataag 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  14737812 aaaagataaaataaagtcaaattgttttcataag 14737779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 40943498 - 40943465
Alignment:
Q  76 ctacaataaaagataaaataaagtcaaactgttt 109  Q
    |||||| |||||||||||||||||||||||||||    
T  40943498 ctacaacaaaagataaaataaagtcaaactgttt 40943465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 45107548 - 45107616
Alignment:
Q  45 tatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||| |||||||||||| |||||||  || ||| || |||| |||||||||||||||||| ||||||||    
T  45107548 tatcatataagtgcttatctataagctatttctataagaaaa-ataaaataaagtcaaactattttcata 45107616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 48133112 - 48133071
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgc 58  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  48133112 ttaattaagcgcttatagcataaacgcttatcatataagtgc 48133071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 52286599 - 52286672
Alignment:
Q  41 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| ||||| ||||||| |||||   || |||||| ||||||||||||||||| ||||  ||||||||    
T  52286599 cgcttatcatataagcgcttatgaataagatatttctacaacaaaagataaaataaagttaaacaattttcata 52286672  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 608447 - 608343
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgt 107  Q
    |||||||  ||||||||| |||||||  |||||   |||||| ||| || |||||||||||||  || ||| ||  |||||| ||||||||| |||||||    
T  608447 ataaacaacttaattaagcgcttataacataaatatttatcacataggtacttatgtataagctatttctaaaagcaaagatgaaataaagttaaactgt 608348  T
Q  108 tttca 112  Q
    |||||    
T  608347 tttca 608343  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 6933105 - 6933037
Alignment:
Q  46 atcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||| ||||||||| ||||||||||  ||  || || |||| |||||||||||||||| ||||||||||    
T  6933105 atcaaataagtgctcatgtataagccatttttataacaaaacataaaataaagtcaaattgttttcata 6933037  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 26184652 - 26184745
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||| || |||||||| ||||||||||||    ||||| ||||||||||| |  || ||| || ||||| ||||||||||||||| | ||||||||    
T  26184652 ttaattgagcgcttatagcataaacgcttat----taagtacttatgtataaactatttctataagaaaaggtaaaataaagtcaaattattttcata 26184745  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 28909910 - 28909980
Alignment:
Q  38 aaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgtttt 110  Q
    |||||||||| | |||| |||||||||||||||| || | | |||||||||| ||||||||||||||| ||||    
T  28909910 aaacgcttataacataaatgcttatgtataagcaatttc-agaataaaagat-aaataaagtcaaactatttt 28909980  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 35080202 - 35080146
Alignment:
Q  58 cttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||| |||||||| || ||| || |||| |||||||||||||||||||||| ||||    
T  35080202 cttatatataagcaatttctataacaaaaaataaaataaagtcaaactgtttccata 35080146  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 38651547 - 38651483
Alignment:
Q  52 taagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcataag 116  Q
    |||||||||||||||||||   | ||| || |||||||||| ||||||| || ||||||||||||    
T  38651547 taagtgcttatgtataagctaattctataacaaaagataaactaaagtcgaattgttttcataag 38651483  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 49173293 - 49173389
Alignment:
Q  8 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaac 104  Q
    |||||||  ||||||| |||||||||| |||| | ||| ||| |||||||||| | |||||||  || || |||||| | |||||||||||| ||||    
T  49173293 ataaacaacttaattatgtgcttatagcataagcacttctcatataagtgcttgtctataagctgtttctgcaataacaaataaaataaagttaaac 49173389  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 27483 - 27570
Alignment:
Q  27 gcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||| |||| | |||||||  ||||||||||||||||||   || ||| || | ||||||||||||||||||| ||||||||||    
T  27483 gcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcata 27570  T

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Target: scaffold0508 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 9938 - 9851
Alignment:
Q  27 gcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    |||||||| ||||| |||||||| ||| |||||||||||||||   || ||| || |||| ||||||| ||||||||  |||||||||    
T  9938 gcttatagaataaatgcttatcatataggtgcttatgtataagttatttctataacaaaaaataaaattaagtcaaaaagttttcata 9851  T

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Target: scaffold0072 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 4869 - 4966
Alignment:
Q  17 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaactgttttcata 114  Q
    ||||||||| |||||||| ||||| |  ||||| |||||||| ||| |||||||  || ||| ||||| | |||||| ||| ||||||||||| ||||    
T  4869 ttaattaagcgcttatagcataaatgtctatcatataagtgcctatatataagctatttctataataatatataaaacaaattcaaactgtttccata 4966  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 5816 - 5744
Alignment:
Q  27 gcttatagtataaacgcttatcagataagtgcttatgtataag-cacttactacaataaaagataaaataaag 98  Q
    ||||||||||||||| ||||||| |||||||||||| || |||  | || ||| ||| |||||||||||||||    
T  5816 gcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 5744  T

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