View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6139_low_7 (Length: 314)
Name: NF6139_low_7
Description: NF6139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6139_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 71 - 297
Target Start/End: Original strand, 22314133 - 22314359
Alignment:
| Q |
71 |
tgtttcccacatatggcaaatggtcaagattcacattttttaatctcatttatcggagacaaaatatgtttgctagtgttcgctcagatcgactataggt |
170 |
Q |
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| T |
22314133 |
tgtttcccacatatggcaaatggtcaagattcacattttttaatctcacttattggagaaaaaatatgtttgctagtgttcgctcagatcgactataggt |
22314232 |
T |
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| Q |
171 |
gtttctgacataacaagttaagccttatcttgacaaaccatttgtgaggttagcataatactaaatttggtgatggtcgtcataagctccttactcaaaa |
270 |
Q |
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|| |||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
22314233 |
gtctctgacatgacaagttaaggtttatcttgacaaactatttgtgaggttagcatgatactgaatttggtgatggtcgtcgtaagctccttactcaaaa |
22314332 |
T |
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| Q |
271 |
tatagaatcaacaaaacaggtcattct |
297 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22314333 |
tatagaatcaacaaaacaggtcattct |
22314359 |
T |
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