View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6140_high_1 (Length: 565)
Name: NF6140_high_1
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6140_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 4 - 543
Target Start/End: Original strand, 14068823 - 14069362
Alignment:
| Q |
4 |
atctcgaagaatatgacacatgctggtgaaataagtgcaacgcaaaaatagatgaccaattgttccctccataccacactcgcctacacacgaagaagat |
103 |
Q |
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| T |
14068823 |
atctcgaataagatgacacatgctggtgaaataagtgcaacgcaaaaatagatgactaattgttccctccataccacactcgcctacacacgaagaagat |
14068922 |
T |
|
| Q |
104 |
tatgcttgaataatgtcacataataataaattgctctttgttggtggacggttacgaaacagacgtcattgcaaaaaacaacacttttaaaagaacatgt |
203 |
Q |
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| T |
14068923 |
tatgcttgaataatgtcacataataataaattgccctttgttggtggacggttacgaaacagacgccattgcaaaaaacaacacttttaaaagaacatgt |
14069022 |
T |
|
| Q |
204 |
ttatgccacatattatccaccagaaaatggtcattgggcttttcatgtggcgtgaagaaatgataaatatcattaactgaatagcctttaaccaaatcta |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14069023 |
ttatgccacatattatccaccagaaaatggtcattgggcttttcatgtgccatgaagaaatgataaatatcattaactgaatggcctttaaccaaatcta |
14069122 |
T |
|
| Q |
304 |
aaagccacttccacctatctaatatgtttttctgcaaaacaatattacggaacacaaaacagcttccctaacatggtcttcctcccacaaaaacaacctc |
403 |
Q |
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| T |
14069123 |
aaagctacttccacctatctaatatgttttcctgcaaaacaatattacggaacacaaaacagcttccctaacatggtcttcctcccacaaaaacaacctc |
14069222 |
T |
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| Q |
404 |
cacccccacttctatgcttcttcccccatcaacagttaataaccgattttcatataagtcaaaataactggctaaacctatcctaaagaggagcatcccg |
503 |
Q |
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| T |
14069223 |
cacccccgcttccatgcttcttcccccatcaacttttaataaccgattttcatataagtcaaaataactagctaaacctatcccaaaggggagcatcccg |
14069322 |
T |
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| Q |
504 |
catccaactatcaatccaaaaataagtgtcggcaccatca |
543 |
Q |
| |
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| T |
14069323 |
catccaactatcaatccaaaaataagtgtcggcaccatca |
14069362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 39 - 364
Target Start/End: Complemental strand, 32409037 - 32408713
Alignment:
| Q |
39 |
tgcaacgcaaaaatagatgaccaattgttccctccataccacactcgcctacacacgaagaagattatgcttgaataatgtcacataataataaattgct |
138 |
Q |
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||||||||||||| | |||| |||||||| ||| |||||||||| | |||| ||| ||| ||||||| |||||||||| |||||| || ||||||| |
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| T |
32409037 |
tgcaacgcaaaaacaaatgatcaattgtttccttcataccacacccacctatacagaaagcagattatctttgaataatgccacatattagtaaattgtc |
32408938 |
T |
|
| Q |
139 |
ctttgttggtggacggttacgaaacagacgtcattgcaaaaaacaacacttttaaaagaacatgtttatgccacatattatccaccagaaaatgg-tcat |
237 |
Q |
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| T |
32408937 |
ctttgttggtagacggtcacgaaacagacgccat-gcaaaaggcaggacttttaag-gaacatgtttatgccacatatcatctaccagaaaaacgatcac |
32408840 |
T |
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| Q |
238 |
tgggcttttcatgtggcgtgaagaaatgataaatatcattaactgaatagcctttaaccaaatctaaaagccacttccacctatctaatatgtttttctg |
337 |
Q |
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| |||| ||||| || |||||||||||||||| |||||| ||||||| ||||||||| || |||||||||||||||||||||| ||| ||||| | | |
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| T |
32408839 |
taggctcttcatttgttgtgaagaaatgataaacatcattggctgaatatcctttaaccggatataaaagccacttccacctatctgatacgttttccag |
32408740 |
T |
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| Q |
338 |
caaaacaatattacggaacacaaaaca |
364 |
Q |
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|||| |||||||| ||| ||||||||| |
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| T |
32408739 |
caaaccaatattatggagcacaaaaca |
32408713 |
T |
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