View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6140_high_10 (Length: 265)
Name: NF6140_high_10
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6140_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 6273433 - 6273668
Alignment:
| Q |
14 |
atcaaggagaagttcaattattgggtgtaggaggaagtccatttgttcgaagggtgcaaattgctctaaaactaaagggtattgaatacacttacattga |
113 |
Q |
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| T |
6273433 |
atcaaggagaagttcaattgttaggtgtaggaggaagcccatttgttcgaagggtgcaaattgctctaaaactaaagggtattgaatacacttacattga |
6273532 |
T |
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| Q |
114 |
agaaaatctaaggaacaaaagtgatcttcttcttaagtataatcctattcacaagaaagtgcctgtttttgtccataatggaaaacccttagctgagtcc |
213 |
Q |
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| T |
6273533 |
agaaaatttaaggaacaaaagtgatcttcttcttaagtataatcctattcacaagaaggtgcctgtttttgtccataatggaaaacccttagctgagtcc |
6273632 |
T |
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| Q |
214 |
cttgtgatccttgaatacattgatgaaacatgggag |
249 |
Q |
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| T |
6273633 |
cttgtgatccttgaatacattgatgaaacatgggag |
6273668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 6269604 - 6269739
Alignment:
| Q |
111 |
tgaagaaaatctaaggaacaaaagtgatcttcttcttaagtataatcctattcacaagaaagtgcctgtttttgtccataatggaaaacccttagctgag |
210 |
Q |
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| T |
6269604 |
tgaagaaaatctagctaataaaagtgatgatcttcttaaatacaatcctgtttacaagaaggtgcctattcttgttcacaatggaaatccaattgctgag |
6269703 |
T |
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| Q |
211 |
tcccttgtgatccttgaatacattgatgaaacatgg |
246 |
Q |
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| T |
6269704 |
tctcttatcattcttgaatacatagatgagacatgg |
6269739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 23802652 - 23802579
Alignment:
| Q |
166 |
aagaaagtgcctgtttttgtccataatggaaaacccttagctgagtcccttgtgatccttgaatacattgatga |
239 |
Q |
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| T |
23802652 |
aagaaagttcctgtttttattcataatgataagcccatatcagagtcccttgtgattcttgaatatattgatga |
23802579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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