View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6140_high_2 (Length: 487)
Name: NF6140_high_2
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6140_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Complemental strand, 44460257 - 44459800
Alignment:
| Q |
20 |
cattgcagccatttttcttaatatcatgaaaatgatttgtgcattctgaatattgactataactttgtgctgcattataatccttaacattgtcatcaac |
119 |
Q |
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| T |
44460257 |
cattgcagccatttttcttaatatcatgaaaatgatttgtgcattctgaacattgactataactttgtgctgcattataatccttaacattgtcatcaac |
44460158 |
T |
|
| Q |
120 |
attgttgttggacaactcaaagttattgccaataagatccttctgcnnnnnnnttatgctttcgttggccgacgattcttcttgtaatgcattaagaacc |
219 |
Q |
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| T |
44460157 |
attgttgttggacaactcaaagttattgccaataagatccttctgcaaaaaagttatgctttcgttggccgacgattcttcttgtaatgcattaagaacc |
44460058 |
T |
|
| Q |
220 |
tcttctgacaaatatttggatataatttccagtggctcaacattctgtagaggggcatcatttgatccatctgctgccttagctacactgtacccattcc |
319 |
Q |
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| T |
44460057 |
tcttctgacaaatatttggatataatttccagtggctcaacattctgtagaggggcatcatttgatccatctgctgccttagctacactgtacccattcc |
44459958 |
T |
|
| Q |
320 |
accattcacctaaccattcatcaaacattgtattcttagtagccatggaccataagaacattaaaacatgttgttcttcctgtgttaaagatgccattag |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459957 |
accattcacctaaccattcatcaaacattgtattcttagtagccatggaccataagaacattaaaacatgttgttcttcctgtgttaaagatgccattag |
44459858 |
T |
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| Q |
420 |
ccaaggtatcatatcttgtaatatttctgcacttattcttccaagtatgcatcctatg |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44459857 |
ccaaggtatcatatcttgtaatatttctgcacttattcttccaagtatgcaccctatg |
44459800 |
T |
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