View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6140_high_6 (Length: 362)
Name: NF6140_high_6
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6140_high_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 36314000 - 36313669
Alignment:
| Q |
16 |
gaccgaattggcttgatcttccaaatgatttgacagaaaacattcttcagaggcttggtattgaaattgtgacgagtgcatgtcgtgtatgcactcaatg |
115 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
36314000 |
gaccaaattggcttgatcttccaagtgatttgacagaaaacattcttcagaggcttggtattgaaattgtgacgagtgcatgttgtgtatgcactcaatg |
36313901 |
T |
|
| Q |
116 |
gttgaagatttgcaaggatcctctcatgtggcgcactattcgcatgtgctacatctctgatttatcctacctacgttttacgaggattttttacaaagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36313900 |
gttgaagatttgcaaggatcctctcatgtggcgcactattcgcatgtgctacatctgtgatttatcctacctacgttttaggaggattttttacaaagtt |
36313801 |
T |
|
| Q |
216 |
gtcaaacgaagttgcggtcatcttaaagacattaatattgagtattattgcaccgatgatatcctcaaatgcatagctgataagtaattaataccaaaat |
315 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36313800 |
gtcaaccgaagttgtggtcatcttaaagacattaatattgagtattattgcaccgatgatatcctcaaatgcatagctgataagtaattaataccaaaat |
36313701 |
T |
|
| Q |
316 |
ctcaatgtattcctgctttcatcggtagatat |
347 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
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|
| T |
36313700 |
ctcaatgtattcctgctttcatctgtagatat |
36313669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 36321411 - 36321266
Alignment:
| Q |
14 |
aggaccgaattggcttgatcttccaaatgatttgacagaaaacattcttcagaggcttggta---ttgaaattgtgacgagtgcatgtcgtgtatgcact |
110 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || || |||||| | |
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|
| T |
36321411 |
aggaccaaattggcttgatcttccaagtgatttgacagaaaacatccttcagaggcttggtacgtttgaaattgtgacgagtgcttgccgagtatgccca |
36321312 |
T |
|
| Q |
111 |
caatggttgaagatttgcaaggatcctctcatgtggcgcactattc |
156 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| ||| ||||| |
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|
| T |
36321311 |
caatggttgaacatttgcaaggatccactcatgtggtgcattattc |
36321266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 200 - 336
Target Start/End: Complemental strand, 36321216 - 36321080
Alignment:
| Q |
200 |
gattttttacaaagttgtcaaacgaagttgcggtcatcttaaagacattaatattgagtattattgcaccgatgatatcctcaaatgcatagctgataag |
299 |
Q |
| |
|
||||| || ||| ||| ||||||| ||||||||||||||| || ||||| |||||||||||||||||||| |||||| ||||||||||||||| || ||| |
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|
| T |
36321216 |
gatttgttgcaatgttatcaaacggagttgcggtcatcttgaaaacattgatattgagtattattgcaccaatgataccctcaaatgcatagccgacaag |
36321117 |
T |
|
| Q |
300 |
taattaataccaaaatctcaatgtattcctgctttca |
336 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
36321116 |
taattaataccaaaatctcaatttgttcctgcattca |
36321080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 36334055 - 36333923
Alignment:
| Q |
41 |
tgatttgacagaaaacattcttcagaggcttggta---ttgaaattgtgacgagtgcatgtcgtgtatgcactcaatggttgaagatttgcaaggatcct |
137 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| | ||||||||||||||||| || || || || | ||||||| ||| ||||||||||||||| |
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|
| T |
36334055 |
tgatttgacagcaaacatccttcagaggcttggtacgttggaaattgtgacgagtgcttgccgagtgtgtccacaatggtggaacatttgcaaggatcct |
36333956 |
T |
|
| Q |
138 |
ctcatgtggcgcactattcgcatgtgctacatc |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
36333955 |
ctcatgtggcgcactattcgcatgtgctacatc |
36333923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 36333863 - 36333751
Alignment:
| Q |
224 |
aagttgcggtcatcttaaagacattaatattgagtattattgcaccgatgatatcctcaaatgcatagctgataagtaattaataccaaaatctcaatgt |
323 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||| || || ||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
36333863 |
aagttgtggtcatcttgaagacattgatattaagcgtttttgcatcgatgatctccttaaatgcatagctgatcagtaattaataccaaaatcttaattt |
36333764 |
T |
|
| Q |
324 |
attcctgctttca |
336 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
36333763 |
attcctgcattca |
36333751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 36328236 - 36328097
Alignment:
| Q |
21 |
aattggcttgatcttccaaatgatttgacagaaaacattcttcagaggcttggta---ttgaaattgtgacgagtgcatgtcgtgtatgcactcaatggt |
117 |
Q |
| |
|
|||||| |||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||| ||| ||||||||| || || | | | ||||||| |
|
|
| T |
36328236 |
aattggtttgatcttccgattgatttgacagcaaacatccttcagaggcttggtacgtttgaaattctgaggagtgcatgccgagtgtccccgcaatggt |
36328137 |
T |
|
| Q |
118 |
tgaagatttgcaaggatcctctcatgtggcgcactattcg |
157 |
Q |
| |
|
||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
36328136 |
ggaacgtttgcaaggatcctgtcatgtggcgaactattcg |
36328097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 36309896 - 36309763
Alignment:
| Q |
18 |
ccgaattggcttgatcttccaaatgatttgacagaaaacattcttcagaggcttggt---attgaaattgtgacgagtgcatgtcgtgtatgcactcaat |
114 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||| ||||| ||||||||| |||||||||||||||||||||| || || || | |||| |
|
|
| T |
36309896 |
ccgaattggcttgatcttcctatagatttgacagcaaacatccttcataggcttggtgcgtttgaaattgtgacgagtgcatg-cgagtgtgtccgcaat |
36309798 |
T |
|
| Q |
115 |
ggttgaagatttgcaaggatcctctcatgtggcgc |
149 |
Q |
| |
|
||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
36309797 |
ggtggaacatttgcaaggatcctctaatgtggcgc |
36309763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 30201120 - 30201258
Alignment:
| Q |
21 |
aattggcttgatcttccaaatgatttgacagaaaacattcttcagaggcttggta---ttgaaattgtgacgagtgcatgtcgtgtatgcactcaatggt |
117 |
Q |
| |
|
||||||||||| ||||| || || | ||||||||||||||||| |||||| ||| ||||||||||||| |||||||||| || || ||| ||||| |
|
|
| T |
30201120 |
aattggcttgaacttcctaaagacattacagaaaacattcttcaaaggcttagtaccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggt |
30201219 |
T |
|
| Q |
118 |
tgaagatttgcaaggatcctctcatgtggcgcactattc |
156 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
30201220 |
ggaacatttgcaaggatcctctcatgtggcacaccattc |
30201258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 36336701 - 36336651
Alignment:
| Q |
105 |
tgcactcaatggttgaagatttgcaaggatcctctcatgtggcgcactatt |
155 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
36336701 |
tgcactcaatggttgaagatttgcaagaatcctctcacgtggcgcactatt |
36336651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 317
Target Start/End: Complemental strand, 36328033 - 36327931
Alignment:
| Q |
215 |
tgtcaaacgaagttgcggtcatcttaaagacattaatattgagtattattgcaccgatgatatcctcaaatgcatagctgataagtaattaataccaaaa |
314 |
Q |
| |
|
||||||| ||||| || ||||||| ||||||| |||||||| || ||||||| |||| ||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
36328033 |
tgtcaaaagaagtagcagtcatctcgaagacatatatattgagcgtttttgcaccagtgatctcctcaagttcatagctgaaaagtaattaataccaaaa |
36327934 |
T |
|
| Q |
315 |
tct |
317 |
Q |
| |
|
||| |
|
|
| T |
36327933 |
tct |
36327931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 36326128 - 36326051
Alignment:
| Q |
224 |
aagttgcggtcatcttaaagacattaatattgagtattattgcaccgatgatatcctcaaatgcatagctgataagta |
301 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||| || ||||||| ||||| |||||||||||||||| || ||||| |
|
|
| T |
36326128 |
aagttgcggtcatcttgaagtcattgatattgagcgtttttgcaccaatgatctcctcaaatgcatagccgacaagta |
36326051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 30227327 - 30227428
Alignment:
| Q |
53 |
aaacattcttcagaggcttggta---ttgaaattgtgacgagtgcatgtcgtgtatgcactcaatggttgaagatttgcaaggatcctctcatgtggcgc |
149 |
Q |
| |
|
|||||||||||| |||||||||| | || |||||||| |||||||||| || || ||| || || ||| ||||||||||||||||||||||||||| |
|
|
| T |
30227327 |
aaacattcttcaaaggcttggtaccatcgagattgtgacaagtgcatgtcaagtgtgtcctctatagtggaacatttgcaaggatcctctcatgtggcgc |
30227426 |
T |
|
| Q |
150 |
ac |
151 |
Q |
| |
|
|| |
|
|
| T |
30227427 |
ac |
30227428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 29857007 - 29857048
Alignment:
| Q |
220 |
aacgaagttgcggtcatcttaaagacattaatattgagtatt |
261 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
29857007 |
aacgaagttgcggtcatcttgaagacatcaatattgagtatt |
29857048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 30223140 - 30223187
Alignment:
| Q |
114 |
tggttgaagatttgcaaggatcctctcatgtggcgcactattcgcatg |
161 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
30223140 |
tggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatg |
30223187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 36326235 - 36326202
Alignment:
| Q |
127 |
gcaaggatcctctcatgtggcgcactattcgcat |
160 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
36326235 |
gcaaggatcctctcatgtggtgcactattcgcat |
36326202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 30214723 - 30214803
Alignment:
| Q |
75 |
attgaaattgtgacgagtgcatgtcgtgtatgcactcaatggttgaagatttgcaaggatcctctcatgtggcgcactatt |
155 |
Q |
| |
|
||||| |||||||| |||||||||| || || ||| ||||| ||| ||||||||||||||||| || |||| ||||||| |
|
|
| T |
30214723 |
attgagattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcttatatggcacactatt |
30214803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 16955798 - 16955661
Alignment:
| Q |
21 |
aattggcttgatcttccaaatgatttgacagaaaacattcttcagaggcttggta---ttgaaattgtgacgagtgcatgtcgtgtatgcactcaatggt |
117 |
Q |
| |
|
||||||||||| || ||||| |||||| || ||||||||| |||||||||| || |||||||||| || |||| ||||| || ||| || ||||| |
|
|
| T |
16955798 |
aattggcttgaactaccaaaagatttggcaataaacattctccagaggcttgatactattgaaattgtcacaagtgtatgtcaagtgtgccctttatggt |
16955699 |
T |
|
| Q |
118 |
tgaagatttgcaaggatcctctcatgtggcgcactatt |
155 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16955698 |
ggaatatttgcaaggatcctctcatgtggcgcactatt |
16955661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 16644816 - 16644731
Alignment:
| Q |
76 |
ttgaaattgtgacgagtgcatgtcgtgtatgcactcaatggttgaagatttgcaaggatcctctcatgtggcgcactattcgcatg |
161 |
Q |
| |
|
||||||||||||| ||||||| | || || ||| ||||| ||| ||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
16644816 |
ttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg |
16644731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 17619177 - 17619092
Alignment:
| Q |
76 |
ttgaaattgtgacgagtgcatgtcgtgtatgcactcaatggttgaagatttgcaaggatcctctcatgtggcgcactattcgcatg |
161 |
Q |
| |
|
||||||||||||| ||||||| | || || ||| ||||| ||| ||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
17619177 |
ttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg |
17619092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 16053723 - 16053663
Alignment:
| Q |
14 |
aggaccgaattggcttgatcttccaaatgatttgacagaaaacattcttcagaggcttggt |
74 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||| ||| || ||||||||||||||| |
|
|
| T |
16053723 |
aggaccaaattggcttgatcttcctagagatttgacatcaaatatccttcagaggcttggt |
16053663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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