View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6140_low_10 (Length: 289)
Name: NF6140_low_10
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6140_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 43996704 - 43996959
Alignment:
| Q |
14 |
catcactgacacaaggttgaagatgaacagtgttgtttgaaaattatcaactgtgttcttatattctcttacttattcaaattagtcgttgtttaaagtt |
113 |
Q |
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| T |
43996704 |
catcactgacacaaggttgaagatgaacagtgttgtttgaaaattatcaattgtgttcttatattctcttacttattcaatttagtcgttgttta----- |
43996798 |
T |
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| Q |
114 |
acttggttgcattataacccatgacttgagtaatgagtatttaaatcatagtattatagtgtcaaattaaagcatattcatgagtgaattatttcactta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
43996799 |
-cttggttgcattataacccatgacttgagtaatgagtatttaaatcatagtattatagtgtcaaattaaaacatattcatcattgaattatttcactta |
43996897 |
T |
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| Q |
214 |
ttatcaaatcgatgattgcataatctaaattgtaactatcattgttctcaccactatcaact |
275 |
Q |
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| T |
43996898 |
ctatcaaatcgatgattgcataatctaaattgtaactatcattgttctcaccactatcaact |
43996959 |
T |
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