View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6140_low_3 (Length: 471)

Name: NF6140_low_3
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6140_low_3
NF6140_low_3
[»] chr6 (17 HSPs)
chr6 (4-177)||(5065004-5065178)
chr6 (319-456)||(5065365-5065502)
chr6 (24-186)||(5346607-5346766)
chr6 (312-456)||(5253775-5253919)
chr6 (193-351)||(5126268-5126427)
chr6 (222-351)||(5065195-5065322)
chr6 (393-456)||(23127300-23127363)
chr6 (293-371)||(5178132-5178210)
chr6 (293-346)||(5688716-5688769)
chr6 (294-346)||(5279988-5280040)
chr6 (403-456)||(5398288-5398341)
chr6 (304-456)||(5177981-5178127)
chr6 (402-456)||(5279806-5279860)
chr6 (402-452)||(5346275-5346325)
chr6 (402-456)||(5688902-5688956)
chr6 (261-309)||(5253988-5254036)
chr6 (304-344)||(5279915-5279955)
[»] chr3 (4 HSPs)
chr3 (403-456)||(47985393-47985446)
chr3 (403-456)||(47994680-47994733)
chr3 (403-456)||(48003967-48004020)
chr3 (403-456)||(48013252-48013305)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 5065004 - 5065178
Alignment:
Q  4 ccacgcactacagtttatacttctcattcagaaaacttttttcataccttttatgtacactggtaatgaatgtttaaaactttttcatatattgatgatt 103  Q
    |||| |||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  5065004 ccacacactacagtttatacttcccattcagaaaacttctatcataccttttatgtacactcgtaatgaatgtttaaaacttcttcatatattgatgatt 5065103  T
Q  104 ttacaatgatagaaccaatgaatatatatgaaatttctaaagcctaacagaag-aaaatgaacgaaggcagattg 177  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  5065104 ttacaatgatagaaccaacgaatacatatgaaatttctaaagcctaacagaagaaaaatgaacaaaagcagattg 5065178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 319 - 456
Target Start/End: Original strand, 5065365 - 5065502
Alignment:
Q  319 aaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtccatcatatataagataa 418  Q
    ||||||||||||||||||||  |||||||||||| || |||||||||||||||||||||||||| | |||||||||||  || |||||||||| ||||||    
T  5065365 aaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataa 5065464  T
Q  419 actgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5065465 actgttgtcctcttcacaacgaaaccgttctcaaaaac 5065502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 5346766 - 5346607
Alignment:
Q  24 ttctcattcagaaaacttttttcataccttttatgtacactggtaatgaatgtttaaaactttttcatatattgatgattttacaatgatagaaccaatg 123  Q
    |||||||||||| ||||||| ||||   ||||| ||||||||||||||||||||||||| || ||    ||| |||||||||||||||||| |||||||     
T  5346766 ttctcattcagacaacttttatcattttttttaagtacactggtaatgaatgtttaaaatttctt----tatcgatgattttacaatgatataaccaata 5346671  T
Q  124 aatatatatgaaatttctaaagcctaacagaag-aaaatgaacgaaggcagattgcagaatgca 186  Q
    |||| ||||| |||||||| ||||||| ||||| ||||||||| ||||||||||||||| ||||    
T  5346670 aatacatatggaatttctacagcctaaaagaagaaaaatgaacaaaggcagattgcagactgca 5346607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 456
Target Start/End: Complemental strand, 5253919 - 5253775
Alignment:
Q  312 ttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtccatcatatat 411  Q
    |||| ||||| ||||||||||||| || ||||||||||||| || || |||||||| |||||||||||||| | |||||||||||  |  | ||||||||    
T  5253919 ttctaacaaaacattcattttcataaccactactaacaataacattcatatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatat 5253820  T
Q  412 aagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
     ||||||||||| ||||||||||||| |||||  |||||||||||    
T  5253819 gagataaactgtcgtcctcttcacaatgaaactgttctcaaaaac 5253775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 351
Target Start/End: Original strand, 5126268 - 5126427
Alignment:
Q  193 acaactagcagcaccaatacttacccaaccattgttttt-tgtcttccatttcctcttgagaattttcttccttcttttatctgttaagtcatcaaccgg 291  Q
    ||||||||||||||||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||||| || | ||||   |||| |||||||  ||    
T  5126268 acaactagcagcaccaatacttatccaaccattcttttactgtcttccatctcctcttgagaattttcttctttttgttatgctttaaatcatcaatggg 5126367  T
Q  292 cgccacttgaggagagacttttctgacaaagcattcattttcatcactactactaacaat 351  Q
     |||||||||||||| || || |||||||||| ||| ||||| |||  ||||| ||||||    
T  5126368 agccacttgaggagataccttcctgacaaagccttccttttcttcagcactacaaacaat 5126427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 5065195 - 5065322
Alignment:
Q  222 cattgtttt-ttgtcttccatttcctcttgagaattttcttccttcttttatctgttaagtcatcaaccggcgccacttgaggagagacttttctgacaa 320  Q
    ||||||||| |||||||||||||||| | |||| |||||||| |||| || |  ||||||||||| || ||  |||||||||||||||||||||||||||    
T  5065195 cattgttttattgtcttccatttcctttggagatttttcttc-ttctgttgt--gttaagtcatccacaggaaccacttgaggagagacttttctgacaa 5065291  T
Q  321 agcattcattttcatcactactactaacaat 351  Q
    ||||||||||||| |||| ||||| ||||||    
T  5065292 agcattcattttcttcaccactacaaacaat 5065322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 23127300 - 23127363
Alignment:
Q  393 caatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||| ||| ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  23127300 caattagttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaac 23127363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 371
Target Start/End: Complemental strand, 5178210 - 5178132
Alignment:
Q  293 gccacttgaggagagacttttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcat 371  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||  || | | |||||||||||    
T  5178210 gccacttgaggagagacatttctgacaacacattcattttcatcaccactactaacaatgacattgtaatcttgtgcat 5178132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 5688716 - 5688769
Alignment:
Q  293 gccacttgaggagagacttttctgacaaagcattcattttcatcactactacta 346  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  5688716 gccacttgaggagagacatttctgacaacacattcattttcatcaccactacta 5688769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 5280040 - 5279988
Alignment:
Q  294 ccacttgaggagagacttttctgacaaagcattcattttcatcactactacta 346  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  5280040 ccacttgaggagagacatttctgacaacacattcattttcatcaccactacta 5279988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 5398341 - 5398288
Alignment:
Q  403 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||| |||||||||||||||| ||||||||| |||| ||||||| |||||    
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaac 5398288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 456
Target Start/End: Complemental strand, 5178127 - 5177981
Alignment:
Q  304 agagacttttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtcca 403  Q
    |||||||| ||||||||||||||||| |||||||| |||||  |||||     ||||  ||||| | || || | ||||| ||||||  ||||  || ||    
T  5178127 agagacttctctgacaaagcattcatcttcatcaccactacacacaatt----tctt--cttgttcttggcattgctccattttttctccaattggttca 5178034  T
Q  404 tcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||  ||||||||||||||  ||||||||| |||||| |||||||||||    
T  5178033 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaac 5177981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 5279860 - 5279806
Alignment:
Q  402 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||||  ||||||||||||||  ||||||||| |||||| |||||||||||    
T  5279860 catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaac 5279806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 5346325 - 5346275
Alignment:
Q  402 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaa 452  Q
    |||||||||| ||||||| || |||| ||||||||| ||||||||||||||    
T  5346325 catcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaa 5346275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 5688902 - 5688956
Alignment:
Q  402 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||||  ||||||||||||||  ||||||||| |||||| |||||||||||    
T  5688902 catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaac 5688956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 5254036 - 5253988
Alignment:
Q  261 tccttcttttatctgttaagtcatcaaccggcgccacttgaggagagac 309  Q
    ||||||| ||||||||||||||||| |  |||||||||| |||||||||    
T  5254036 tccttctgttatctgttaagtcatccaagggcgccactttaggagagac 5253988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 5279955 - 5279915
Alignment:
Q  304 agagacttttctgacaaagcattcattttcatcactactac 344  Q
    |||||||| ||||||||||||||||| |||||||| |||||    
T  5279955 agagacttctctgacaaagcattcatcttcatcaccactac 5279915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 47985393 - 47985446
Alignment:
Q  403 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||| ||||||||||| | |||||||||||| ||||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaac 47985446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 47994680 - 47994733
Alignment:
Q  403 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||| ||||||||||| | |||||||||||| ||||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaac 47994733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 48003967 - 48004020
Alignment:
Q  403 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||| ||||||||||| | |||||||||||| ||||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaac 48004020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 48013252 - 48013305
Alignment:
Q  403 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaac 456  Q
    |||||||| ||||||||||| | |||||||||||| ||||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaac 48013305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University