View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6140_low_4 (Length: 419)
Name: NF6140_low_4
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6140_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 23971882 - 23971493
Alignment:
| Q |
19 |
taaagatgtgtgggaccttgttgtgaggattgttgatcattggccagttattggcaaatacaaaagtgaacatcatgaaatgatcgttaaggatgctgag |
118 |
Q |
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| T |
23971882 |
taaagatgtgtgggtccttgttgtgaggattgttgatctttggccagttattggcaaatacaaaagtgaacatcttgaaatgatcgttaaggatgttgag |
23971783 |
T |
|
| Q |
119 |
gtatggttttcttttctatctatttgattctttcaataagttcatttcaataacactttactgactacttacaaatttacaaccatacagggtgatataa |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23971782 |
gtatggttttcttttctatctatttgattcattcaataagttcatttcaataacactttactgactacttacaaatttacaaccatacagggtgatgtaa |
23971683 |
T |
|
| Q |
219 |
ttcatattacgctccctaaagaattactcaatacatttaaacctcagctgattttgaaccaaacttatgaaagggagaactttaaggttagcaccaatga |
318 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
23971682 |
ttcatattacgctccctaaagaataactcaataaatttaaacctcgactgattttgaaccaaacttatgaaatggagaactttaaggttagcaacaatga |
23971583 |
T |
|
| Q |
319 |
caccgttgtcaaggcctgtgatcatcgattcagactcactatcacaggtgccattgtcattaccaagcaagattttccagacatccctatg |
409 |
Q |
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| T |
23971582 |
caccgttgtcaaggcctgtgatcatc-attcagactcactatcacagatgccattgtcattaccaagcaagattttccagacatccctatg |
23971493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 33538418 - 33538808
Alignment:
| Q |
19 |
taaagatgtgtgggaccttgttgtgaggattgttgatcattggccagttattggcaaatacaaaagtgaacatcatgaaatgatcgttaaggatgctgag |
118 |
Q |
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|||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||||| ||||||||||||| |
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| T |
33538418 |
taaagatgtgtgggtccttgctgtgaggattgttgatctttggccggttattggcaaatacaaaagtgaaagtcttgaaatgatcattaaggatgctgaa |
33538517 |
T |
|
| Q |
119 |
gtatggttttcttttctatctatttgattctttcaataagttcatttcaataacactttactgactacttacaaatttacaaccatacagggtgatataa |
218 |
Q |
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||| | |||||||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
33538518 |
gtaggcttttcttttcagtctatttcattctttcaataacttcatttcaatatcgctttactgactacttcaaaatttacaaccatacaggctgatgtaa |
33538617 |
T |
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| Q |
219 |
ttcatattacgctccctaaagaattactcaatacatttaaacctcagctgattttgaaccaaacttatgaaagggagaactttaaggttagcaccaatga |
318 |
Q |
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|||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||| |
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| T |
33538618 |
ttcatattacgctcccgaaagaatttctcaatgcatttaaacctcagctgtttttgaaccaaacttatgaaatggagaactttaaggtgagcaacaatga |
33538717 |
T |
|
| Q |
319 |
caccgttgtcaaggcctgtgatcatcgattcagactcactatcacaggtgccattgtcattaccaagcaagattttccagacatccctatg |
409 |
Q |
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|| ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
33538718 |
cagcgttgtcaaggcctgtgatcatcgatttagactcacaatcacaggtgccactgtcattagcaagcaagattttccagacatccctatg |
33538808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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