View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6140_low_5 (Length: 417)

Name: NF6140_low_5
Description: NF6140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6140_low_5
NF6140_low_5
[»] chr8 (6 HSPs)
chr8 (9-200)||(3603121-3603315)
chr8 (199-402)||(3603401-3603603)
chr8 (13-78)||(41999973-42000038)
chr8 (13-78)||(45093130-45093195)
chr8 (13-72)||(14769780-14769839)
chr8 (14-83)||(9215907-9215976)
[»] chr2 (3 HSPs)
chr2 (13-78)||(11996088-11996153)
chr2 (13-78)||(42865606-42865671)
chr2 (13-78)||(24126768-24126833)
[»] chr3 (1 HSPs)
chr3 (14-85)||(1182170-1182241)
[»] chr5 (2 HSPs)
chr5 (13-78)||(32386177-32386242)
chr5 (13-78)||(14024624-14024689)
[»] chr7 (4 HSPs)
chr7 (13-78)||(45034031-45034096)
chr7 (13-78)||(46045596-46045661)
chr7 (13-78)||(8035400-8035465)
chr7 (13-78)||(38111027-38111092)
[»] chr4 (2 HSPs)
chr4 (13-78)||(1369123-1369188)
chr4 (13-78)||(28945721-28945786)
[»] chr1 (2 HSPs)
chr1 (13-78)||(6293705-6293770)
chr1 (13-78)||(28705680-28705745)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 3603121 - 3603315
Alignment:
Q  9 acatcatcacaattgagcttaactcaaccaatcaaa---ggtggcatccaaccgatgtatatagtttcattttaatgaggcactacaagaaaactggttt 105  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3603121 acatcatcacaattgagcttaactcaaccaatcaaattaggtggcatccaaccgatgtatatagtttcattttaatgaggcactacaagaaaactagttt 3603220  T
Q  106 tagaaaccgaaaaattggtcactaaatggagaaaatcgatcactaagtgaattagcgactattttggagacctctaggatcaatatatcttcatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3603221 tagaaaccgaaaaattggtcactaaatggagaaaatcgatcactaagtgaattagcgactattttggagacctctaggatcaatatatcttcatc 3603315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 199 - 402
Target Start/End: Original strand, 3603401 - 3603603
Alignment:
Q  199 tcctatcagcactcttgattattgtgtaggtacttccaatgactaatggaggcatgaaattcatcata---gaaaacctcaatatatatgtgttttgctg 295  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    |||||||||||    
T  3603401 tcctatcaacactcttgattattctgtaggtacttccaatgactaatggaggcatgaaattcatcataagagaaaacctcaatat----gtgttttgctg 3603496  T
Q  296 gtaaaatggacaatagtcaatagtatagatcatgtcataggttatattcattgctcacttcaatcgaacatcgcaatcaatttgatattttatgtacgct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  3603497 gtaaaatggacaatagtcaatagtatagatcatgtcataggttatattcattgctcacttcactcggacatcgcaagcaatttgatattttatgtacgct 3603596  T
Q  396 taataga 402  Q
    |||||||    
T  3603597 taataga 3603603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 42000038 - 41999973
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  42000038 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 41999973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 45093195 - 45093130
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  45093195 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 45093130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 14769839 - 14769780
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagttt 72  Q
    |||||||||| || |||||||||||| | | ||||  |||||||||||||||||||||||    
T  14769839 catcacaattaagtttaactcaaccagttagaggtctcatccaaccgatgtatatagttt 14769780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 9215976 - 9215907
Alignment:
Q  14 atcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcattttaatga 83  Q
    ||||||||| | |||||| ||||||| || |||| ||||||||| | ||||||||||||| |||| ||||    
T  9215976 atcacaattaatcttaacccaaccaaccagaggtcgcatccaactggtgtatatagtttccttttgatga 9215907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 11996088 - 11996153
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||    
T  11996088 catcacaattaagcttaacccaaccaatcagaggtcgcatccaaccgatgtatatagtttcctttt 11996153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 42865671 - 42865606
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  42865671 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 42865606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 24126768 - 24126833
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||| ||||| |||||||| |||| ||||  |||| ||||||||||||||||||||||||| ||||    
T  24126768 catcgcaattaagcttaacccaacaaatcggaggtcgcatccaaccgatgtatatagtttcctttt 24126833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 1182241 - 1182170
Alignment:
Q  14 atcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcattttaatgagg 85  Q
    ||||||||| |||||||| |||||||||| |||| |||| |||||||||||||||||||| |||| ||||||    
T  1182241 atcacaattaagcttaacacaaccaatcagaggtcgcattcaaccgatgtatatagtttccttttgatgagg 1182170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 32386242 - 32386177
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||    
T  32386242 catcacaattaagcttaacccaaccaatcggaggtcgcatccaaccgatgtatatagtttcctttt 32386177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 14024689 - 14024624
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  14024689 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 14024624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 45034031 - 45034096
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| |||||||||  |||| |||||||||||||||||||| |||| ||||    
T  45034031 catcacaattaagcttaacccaaccaatcggaggtcgcatccaaccgatgtatataatttcctttt 45034096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 46045661 - 46045596
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  46045661 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 46045596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 8035465 - 8035400
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||| ||||   |||| ||||||||||||||||||||||||| ||||    
T  8035465 catcacaattaagcttaacccaagcaattggaggtcgcatccaaccgatgtatatagtttcctttt 8035400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 38111027 - 38111092
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| |||||||||||||||||||| |||| ||||    
T  38111027 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatataatttcctttt 38111092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 1369188 - 1369123
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  1369188 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 1369123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 28945721 - 28945786
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  28945721 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 28945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 6293770 - 6293705
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  6293770 catcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 6293705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 28705745 - 28705680
Alignment:
Q  13 catcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 78  Q
    ||||| |||| |||||||| |||||||||  ||||  || ||||||||||||||||||||| ||||    
T  28705745 catcaaaattaagcttaacccaaccaatctgaggtcacacccaaccgatgtatatagtttcctttt 28705680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University