View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6141_high_1 (Length: 500)
Name: NF6141_high_1
Description: NF6141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6141_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 3679663 - 3679174
Alignment:
| Q |
1 |
cttcaatccaattgttggctcaagtttaatatgatttgactagtgccgaacacttttagaagttaaagttctgagaaacacttatctataacttgatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3679663 |
cttcaatccaattgttggctcaagtttaatatgatttgactagtgcagaacacttttagaagttaaagttctgagaaacacttatctatgacttgatctg |
3679564 |
T |
|
| Q |
101 |
tttctttgtttattgtttaatcaaattaggttttatgcttcattctttatctgtatctacttggattggaagctttctttatctgtatctatgacttatt |
200 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3679563 |
tttctttgtttattgtttaatcaaattagatattatgcttcatcctttatctgtatctacttggattggaagctttctttatctgtatctatgacttatt |
3679464 |
T |
|
| Q |
201 |
actcaattctcagttttagtgacataaatgagaattcataaaaacataattgaccatagctgtcatattttcatttctagtactgctatttatcaagaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3679463 |
actcaattctcagttttagtgacataaatgagaattcataaaaacataattgaccataactgtcatattttcatttctagtactgctatttatcaagaac |
3679364 |
T |
|
| Q |
301 |
atgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaagaagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3679363 |
atgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaagaagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgt |
3679264 |
T |
|
| Q |
401 |
atgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaatactcttcgtacaaatatcattatcctttg |
490 |
Q |
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| T |
3679263 |
atgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgttttttatgaatactcttcgtacaaatatcattatcctttg |
3679174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 3703746 - 3703570
Alignment:
| Q |
1 |
cttcaatccaattgtt---ggctcaagtttaatatgatttgactagtgccgaacacttttagaagttaaagttctgagaaacacttatctataacttgat |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
3703746 |
cttcaatccaattgttattggctcaagtttaatatgattcgactattgtagaatactcttagaagttaaagttctgagaaatacttatctatgacttgat |
3703647 |
T |
|
| Q |
98 |
ctgtttctttgtttattgtttaatcaaattaggttttatgcttcattctttatctgtatctacttggattggaagct |
174 |
Q |
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| T |
3703646 |
ctgtttctttgtttattgtttaatcaaattaggttttatgcttcattctttatctgtatctacttggattggaagct |
3703570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 262 - 489
Target Start/End: Complemental strand, 3693925 - 3693705
Alignment:
| Q |
262 |
gtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaa |
360 |
Q |
| |
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|||||||||| ||||||||||||| | |||||||| |||| |||||||| ||||||||||||||||||| || ||||||||||| ||| ||||| |
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| T |
3693925 |
gtcatatttt-atttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatac---gt----gttgtaattataaaggaagaa |
3693834 |
T |
|
| Q |
361 |
gtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaa |
460 |
Q |
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| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| || |
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| T |
3693833 |
gcagtgtatggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaa |
3693734 |
T |
|
| Q |
461 |
tactcttcgtacaaatatcattatccttt |
489 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |
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|
| T |
3693733 |
tattcttcgtagaaatatcattatccttt |
3693705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 255 - 489
Target Start/End: Complemental strand, 3686165 - 3685938
Alignment:
| Q |
255 |
catagctgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
354 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || || |||||||| || |
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|
| T |
3686165 |
cataactgtcatattttt-tttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaa |
3686074 |
T |
|
| Q |
355 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttt |
453 |
Q |
| |
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| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||| |||||| |||| |||| |||||||| |
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| T |
3686073 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttaaaag-aaccaatcacttactgccacatcagttcgcgatgcgttcg |
3685975 |
T |
|
| Q |
454 |
tgatgaatactcttcg-tacaaatatcattatccttt |
489 |
Q |
| |
|
|||| ||| |||||| | |||||||||||||||||| |
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|
| T |
3685974 |
tgatctatattcttcgatgcaaatatcattatccttt |
3685938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 411
Target Start/End: Complemental strand, 3675711 - 3675579
Alignment:
| Q |
273 |
atttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatag |
371 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| || ||||||||||||||||| | || ||||||||||| ||| |||||| ||||||||| |
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| T |
3675711 |
atttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattc---gt----gttgtaattataaaggaagaagcagtgtatag |
3675619 |
T |
|
| Q |
372 |
ttcaggaatgagcggaaatcacagcgtgtatgtgttataa |
411 |
Q |
| |
|
||| ||||||||||||||| ||||| ||| ||||||||| |
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|
| T |
3675618 |
ttctggaatgagcggaaatgacagcacgtaagtgttataa |
3675579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 3703571 - 3703533
Alignment:
| Q |
189 |
ctatgacttattactcaattctcagttttagtgacataa |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
3703571 |
ctatgacttattactcaattcttagttttagtgatataa |
3703533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 3703237 - 3703205
Alignment:
| Q |
222 |
acataaatgagaattcataaaaacataattgac |
254 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
3703237 |
acataaatgagaattcataaaaacaaaattgac |
3703205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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