View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6141_low_3 (Length: 324)
Name: NF6141_low_3
Description: NF6141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6141_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 182 - 309
Target Start/End: Original strand, 14008373 - 14008500
Alignment:
| Q |
182 |
tacactaagataattaaacagtgggttaattatttatttatagtacttatattatccataccaacttccaactatatcaagattcattttttgaacgtgt |
281 |
Q |
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| T |
14008373 |
tacactaagataattaaacagtgggttaattatttatttatagtaattatattatccataccaacttccaactatatcaagattcattttttgaacgtgt |
14008472 |
T |
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| Q |
282 |
tcattcaatttggtatgagcttgaaagg |
309 |
Q |
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| T |
14008473 |
tcattcaatttggtatgagcttgaaagg |
14008500 |
T |
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Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 14008204 - 14008330
Alignment:
| Q |
13 |
aatatgtcaaacaaaaaatagagatatagtataagtactagtgatattaaaacttaaaacacgcatacacgtacatcttctataataactcaaaattatt |
112 |
Q |
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| T |
14008204 |
aatatatcaaacaaaaaatagagctatagtataagtactagtgatattaaaacttaaaacacgcatacacgtacatcttctataataactcaaaattatt |
14008303 |
T |
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| Q |
113 |
atagacttcaaaacatgactaagcatt |
139 |
Q |
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| T |
14008304 |
atagacttcaaaacatgactaagcatt |
14008330 |
T |
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