View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6141_low_5 (Length: 251)
Name: NF6141_low_5
Description: NF6141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6141_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 23409914 - 23409692
Alignment:
| Q |
35 |
aaccttctagtttcagagaaaaatgatcg------tattgaaataagatgaaaacaacttttaaacatgtcgtaaactattttcataagttcttttaaat |
128 |
Q |
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| T |
23409914 |
aaccttctagtttcaaagaaaaatgatcgacatcatattgaaataagatgaaaacaacttttaaacatgtcgtaaactattttcataagttctttcaaat |
23409815 |
T |
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| Q |
129 |
acactctcatcgaagatcaaactaagagataaacaaagaaacgaaccttagcaatcgcttttggcggatagtcattgtttagtttaggatccacacattg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23409814 |
acactctcatcgaagatcaaactaagagataaacaaagaaacgaaccttagcaatcgcttttgggggatagtcattgtttagtttaggatccacacattg |
23409715 |
T |
|
| Q |
229 |
cttcactttgtcttcacttagtc |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
23409714 |
cttcactttgtcttcacttagtc |
23409692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 4576844 - 4576894
Alignment:
| Q |
69 |
aaataagatgaaaacaacttttaaacatgtcgtaaactattttcataagtt |
119 |
Q |
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| T |
4576844 |
aaataagctgaacacaacttataaacatgtcataaactattttcataagtt |
4576894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 10199439 - 10199387
Alignment:
| Q |
69 |
aaataagatgaaaacaacttttaaacatgtcgtaaactattttcataagttct |
121 |
Q |
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| T |
10199439 |
aaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttct |
10199387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 37216238 - 37216164
Alignment:
| Q |
172 |
aaccttagcaatcgcttttggcggatagtcattgtttagtttaggatccacacattgcttcactttgtcttcact |
246 |
Q |
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| T |
37216238 |
aaccttagcaattgcctttggggggtagtcattgtttagtttaggatccacacattgtttcactttgtcctcact |
37216164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 11707094 - 11707146
Alignment:
| Q |
69 |
aaataagatgaaaacaacttttaaacatgtcgtaaactattttcataagttct |
121 |
Q |
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| T |
11707094 |
aaataagctgaaaacaacttataaacatgtcataatctattttgataagttct |
11707146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 499763 - 499710
Alignment:
| Q |
68 |
gaaataagatgaaaacaacttttaaacatgtcgtaaactattttcataagttct |
121 |
Q |
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| T |
499763 |
gaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttct |
499710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 33887868 - 33887921
Alignment:
| Q |
68 |
gaaataagatgaaaacaacttttaaacatgtcgtaaactattttcataagttct |
121 |
Q |
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| T |
33887868 |
gaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattct |
33887921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 17223068 - 17223020
Alignment:
| Q |
68 |
gaaataagatgaaaacaacttttaaacatgtcgtaaactattttcataa |
116 |
Q |
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|||||||| |||||||| ||| | |||||||| |||||||||||||||| |
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| T |
17223068 |
gaaataagttgaaaacagcttatgaacatgtcataaactattttcataa |
17223020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 40158760 - 40158808
Alignment:
| Q |
72 |
taagatgaaaacaacttttaaacatgtcgtaaactattttcataagttc |
120 |
Q |
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|||| |||||||||||| |||||||||| ||| || ||||||||||||| |
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| T |
40158760 |
taagctgaaaacaacttataaacatgtcataagctgttttcataagttc |
40158808 |
T |
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