View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6142_high_1 (Length: 340)

Name: NF6142_high_1
Description: NF6142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6142_high_1
NF6142_high_1
[»] chr1 (3 HSPs)
chr1 (12-324)||(5565489-5565801)
chr1 (56-295)||(5566796-5567038)
chr1 (116-164)||(6408071-6408119)
[»] chr2 (7 HSPs)
chr2 (116-176)||(11749908-11749968)
chr2 (116-176)||(36630198-36630258)
chr2 (116-164)||(37015275-37015323)
chr2 (116-164)||(43802381-43802429)
chr2 (116-154)||(44337290-44337328)
chr2 (98-154)||(34507632-34507688)
chr2 (87-154)||(6001636-6001703)
[»] chr7 (1 HSPs)
chr7 (116-164)||(37170454-37170502)
[»] chr5 (6 HSPs)
chr5 (116-164)||(1379800-1379848)
chr5 (116-164)||(19424810-19424858)
chr5 (116-164)||(20089666-20089714)
chr5 (116-164)||(30822016-30822064)
chr5 (116-154)||(19683573-19683611)
chr5 (87-154)||(30665494-30665561)
[»] chr4 (3 HSPs)
chr4 (98-154)||(10226542-10226598)
chr4 (116-154)||(5055022-5055060)
chr4 (116-154)||(20169881-20169919)
[»] chr8 (1 HSPs)
chr8 (116-164)||(42612693-42612741)
[»] chr6 (3 HSPs)
chr6 (116-164)||(26337091-26337139)
chr6 (116-154)||(13051991-13052029)
chr6 (116-150)||(22027182-22027216)
[»] chr3 (2 HSPs)
chr3 (119-154)||(26526086-26526121)
chr3 (116-154)||(13112218-13112256)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 5565801 - 5565489
Alignment:
Q  12 aagaacatataggcagggattcgtcgttttggttttcctatagtgtggcatgtgtgaattgtcacgcccggacaaaaaagtcataactggatgtaacttt 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||  ||  | |||||||||||    
T  5565801 aagaacatataggcggggattcgtcgttttggttttcctatagtgtggcatgtgtgaagtgtcacgcccagacaaaaaagttctaggtagatgtaacttt 5565702  T
Q  112 ctcctacaagtttggggatattgtaggttgagttatatcgctctcaaaaatgaaaacttactccaattcctgttgggaaaaaatgaaaacttaccataat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  5565701 ctcctacaagtttggggatattgtaggttgagttatatcgctctcaaaaatgaaaacttactccaatttctgttgagaaaaaatgaaaacttaccataat 5565602  T
Q  212 tttttaataatacccttacatattctcccttaaaattcaattttattaagttactaattggttaatacaatttgttagatggacaaaaacatattcagat 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  5565601 tttttaataatatccttacatattctcccttaaaattcaattttattaagttactaattggttgatacaatttgttagatggacaaaaacatgttcagat 5565502  T
Q  312 ttctacaaaaatc 324  Q
    |||||||||||||    
T  5565501 ttctacaaaaatc 5565489  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 56 - 295
Target Start/End: Original strand, 5566796 - 5567038
Alignment:
Q  56 gtggcatgtgtgaattgtcacgcccggacaaaaaagtcataactggatgtaactttctcctacaagtttggggatattgtaggttgagttatatcgctct 155  Q
    |||||||||||||| |||||| | | |||||||  | | ||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||     
T  5566796 gtggcatgtgtgaagtgtcacacacagacaaaactgccctagttggatggaactttctcctacaagttttgagatattgtaggttgagttatatcgctcc 5566895  T
Q  156 caaaaatgaaaacttactccaattcctgttgggaaaaa---atgaaaacttaccataattttttaataatacccttacatattctcccttaaaattcaat 252  Q
     |||||| ||||||||||| |||||| | | |||||||   | | |   |||| | | ||| |||||||| |||||| | |||||||||| ||||| |||    
T  5566896 taaaaataaaaacttactctaattcccgctaggaaaaaaataggtatggttactaaattttattaataattcccttaaacattctcccttcaaatttaat 5566995  T
Q  253 tttattaagttactaattggttaatacaatttgttagatggac 295  Q
    ||||||| ||||| ||||  || ||| ||||||||||||||||    
T  5566996 tttattatgttaccaattcattgatataatttgttagatggac 5567038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 6408119 - 6408071
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  6408119 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 6408071  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 11749908 - 11749968
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatgaaaacttactcca 176  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||| ||| |||||||    
T  11749908 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatgataacctactcca 11749968  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 36630198 - 36630258
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatgaaaacttactcca 176  Q
    |||||||||||||||||||| ||||||||||||||||||  | |||||| ||| |||||||    
T  36630198 tacaagtttggggatattgtcggttgagttatatcgctccgagaaatgataacctactcca 36630258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 37015323 - 37015275
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  37015323 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 37015275  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 43802429 - 43802381
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  43802429 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 43802381  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 44337290 - 44337328
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  44337290 tacaagtttggggatattgtcggttgagttatatcgctc 44337328  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 34507632 - 34507688
Alignment:
Q  98 ctggatgtaactttctcctacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    |||||||| | |||||  ||||||||||||| |||||| ||||||||||||||||||    
T  34507632 ctggatgtcattttctgttacaagtttgggggtattgttggttgagttatatcgctc 34507688  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 6001703 - 6001636
Alignment:
Q  87 aaaagtcataactggatgtaactttctcctacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    |||||| ||| |||||||| | |||||| |||||||||||||||||||| | |||| | |||||||||    
T  6001703 aaaagttatagctggatgtcattttctcttacaagtttggggatattgtcgattgactcatatcgctc 6001636  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 37170502 - 37170454
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  37170502 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 37170454  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 1379848 - 1379800
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  1379848 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 1379800  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 19424810 - 19424858
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  19424810 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 19424858  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 20089666 - 20089714
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  20089666 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 20089714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 30822064 - 30822016
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  30822064 tacaagtttggggatattgtcggttgagttatatcgctccgaaaaatga 30822016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 19683573 - 19683611
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  19683573 tacaagtttggggatattgtcggttgagttatatcgctc 19683611  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 30665494 - 30665561
Alignment:
Q  87 aaaagtcataactggatgtaactttctcctacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    |||||| ||| |||||||| | |||||| |||||||||||||||||||| | |||| | |||||||||    
T  30665494 aaaagttatagctggatgtcattttctcttacaagtttggggatattgtcgattgactcatatcgctc 30665561  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 10226598 - 10226542
Alignment:
Q  98 ctggatgtaactttctcctacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    |||||||| | |||||  |||||||||||||||||||| ||||||||||||||||||    
T  10226598 ctggatgtcattttctgttacaagtttggggatattgtcggttgagttatatcgctc 10226542  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 5055060 - 5055022
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  5055060 tacaagtttggggatattgtcggttgagttatatcgctc 5055022  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 20169919 - 20169881
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  20169919 tacaagtttggggatattgtcagttgagttatatcgctc 20169881  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 42612693 - 42612741
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    ||||||||||||||| |||| ||||||||||||||||||  ||||||||    
T  42612693 tacaagtttggggatgttgtcggttgagttatatcgctccgaaaaatga 42612741  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 26337091 - 26337139
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctctcaaaaatga 164  Q
    ||||||||||||| |||||| ||||||||||||||||||  ||||||||    
T  26337091 tacaagtttgggggtattgtcggttgagttatatcgctccgaaaaatga 26337139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 13051991 - 13052029
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  13051991 tacaagtttggagatattgtcggttgagttatatcgctc 13052029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 22027182 - 22027216
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatc 150  Q
    |||||||||||||||||||| ||||||||||||||    
T  22027182 tacaagtttggggatattgtcggttgagttatatc 22027216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 26526086 - 26526121
Alignment:
Q  119 aagtttggggatattgtaggttgagttatatcgctc 154  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26526086 aagtttggggatattgtcggttgagttatatcgctc 26526121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 13112256 - 13112218
Alignment:
Q  116 tacaagtttggggatattgtaggttgagttatatcgctc 154  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  13112256 tacaagtttgggggtattgtcggttgagttatatcgctc 13112218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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