View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6142_low_4 (Length: 254)

Name: NF6142_low_4
Description: NF6142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6142_low_4
NF6142_low_4
[»] chr3 (13 HSPs)
chr3 (70-230)||(17501196-17501356)
chr3 (16-66)||(55343421-55343471)
chr3 (17-61)||(4556543-4556587)
chr3 (16-66)||(35844315-35844365)
chr3 (16-66)||(40640634-40640684)
chr3 (16-62)||(46297899-46297945)
chr3 (16-72)||(21193589-21193645)
chr3 (16-64)||(47930666-47930714)
chr3 (16-64)||(49359628-49359676)
chr3 (16-73)||(4015442-4015499)
chr3 (19-67)||(22450956-22451004)
chr3 (27-67)||(39282641-39282681)
chr3 (16-64)||(51213118-51213166)
[»] chr2 (13 HSPs)
chr2 (16-67)||(4166919-4166970)
chr2 (16-66)||(18494423-18494473)
chr2 (16-64)||(41465509-41465557)
chr2 (16-64)||(44913662-44913709)
chr2 (15-62)||(3176941-3176988)
chr2 (16-67)||(34441921-34441972)
chr2 (16-66)||(2325525-2325575)
chr2 (16-64)||(4763628-4763676)
chr2 (16-64)||(17245110-17245158)
chr2 (16-60)||(18947598-18947642)
chr2 (16-64)||(19313852-19313900)
chr2 (16-64)||(26357577-26357625)
chr2 (15-67)||(36641983-36642035)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-65)||(133-182)
[»] chr7 (15 HSPs)
chr7 (15-64)||(4582894-4582943)
chr7 (16-62)||(8299192-8299238)
chr7 (16-65)||(32432431-32432480)
chr7 (16-65)||(43686015-43686064)
chr7 (16-64)||(5657619-5657667)
chr7 (16-64)||(8861260-8861308)
chr7 (16-67)||(17842724-17842775)
chr7 (16-67)||(18797301-18797352)
chr7 (16-67)||(26524465-26524516)
chr7 (19-65)||(241024-241070)
chr7 (16-54)||(25691683-25691721)
chr7 (16-66)||(32821191-32821241)
chr7 (16-64)||(23402371-23402419)
chr7 (16-64)||(37109847-37109895)
chr7 (27-67)||(41765227-41765267)
[»] chr5 (14 HSPs)
chr5 (16-67)||(36860420-36860471)
chr5 (16-66)||(22616492-22616542)
chr5 (16-64)||(36866762-36866810)
chr5 (16-64)||(40133385-40133433)
chr5 (16-71)||(8742014-8742069)
chr5 (16-67)||(13956472-13956523)
chr5 (16-66)||(12910348-12910398)
chr5 (16-64)||(7693230-7693278)
chr5 (15-66)||(5112439-5112490)
chr5 (16-63)||(10237415-10237462)
chr5 (15-66)||(35826609-35826660)
chr5 (16-66)||(19119857-19119907)
chr5 (15-65)||(39572818-39572868)
chr5 (16-64)||(26317811-26317859)
[»] chr4 (13 HSPs)
chr4 (16-66)||(35021198-35021248)
chr4 (15-67)||(38812259-38812311)
chr4 (16-67)||(2704509-2704560)
chr4 (16-66)||(4205114-4205164)
chr4 (15-64)||(55241266-55241315)
chr4 (16-67)||(9139244-9139295)
chr4 (16-67)||(27396613-27396664)
chr4 (16-63)||(51204580-51204627)
chr4 (16-62)||(17167715-17167761)
chr4 (16-62)||(17173292-17173338)
chr4 (16-62)||(20097491-20097537)
chr4 (19-64)||(28003152-28003197)
chr4 (15-64)||(38811813-38811862)
[»] chr6 (9 HSPs)
chr6 (16-65)||(3880075-3880124)
chr6 (16-65)||(8513232-8513281)
chr6 (16-66)||(4318959-4319009)
chr6 (16-66)||(11084152-11084202)
chr6 (16-66)||(19631747-19631797)
chr6 (16-62)||(30353494-30353540)
chr6 (19-63)||(20768087-20768131)
chr6 (16-52)||(21017248-21017284)
chr6 (16-64)||(24662190-24662238)
[»] chr8 (11 HSPs)
chr8 (16-67)||(36695109-36695160)
chr8 (16-66)||(34894964-34895014)
chr8 (16-66)||(40862416-40862466)
chr8 (16-64)||(12876108-12876156)
chr8 (27-65)||(16447029-16447067)
chr8 (16-74)||(27082981-27083039)
chr8 (15-64)||(6098660-6098709)
chr8 (16-64)||(13307622-13307670)
chr8 (16-64)||(28220955-28221003)
chr8 (15-63)||(35459840-35459888)
chr8 (16-64)||(41362517-41362565)
[»] chr1 (10 HSPs)
chr1 (16-66)||(1547281-1547331)
chr1 (16-65)||(2959743-2959792)
chr1 (16-65)||(10182140-10182189)
chr1 (16-64)||(43579242-43579290)
chr1 (19-66)||(4150490-4150537)
chr1 (16-66)||(16415639-16415689)
chr1 (16-66)||(22170748-22170798)
chr1 (16-65)||(13876919-13876968)
chr1 (16-65)||(18422646-18422695)
chr1 (16-64)||(38823210-38823258)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 17501196 - 17501356
Alignment:
Q  70 ttttaacctaatatctagggagttcaatgctagatgtagttggccgattataagaataacgaaatgcaaaaagacatctagataattacatgcaacttat 169  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17501196 ttttaacctaatatctagggagttcaatgttagatgtagttggccgattataagaataacgaaatgcaaaaagacatctagataattacatgcaacttat 17501295  T
Q  170 ttaaccattgaagttcgttgtagcaagttgtcatgttaaacttaatatattacaaataacc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17501296 ttaaccattgaagttcgttgtagcaagttgtcatgttaaacttaatatattacaaataacc 17501356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 55343421 - 55343471
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||    
T  55343421 ttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttcctt 55343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 4556587 - 4556543
Alignment:
Q  17 taacttcacgagaaaagtcattttcgtgacttcaccatcgaattt 61  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  4556587 taacttcacgagaaaagtcattttcatgacttcaccatagaattt 4556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 35844365 - 35844315
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||||    
T  35844365 ttaacttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 35844315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 40640634 - 40640684
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||||    
T  40640634 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 40640684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 46297899 - 46297945
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaatttt 62  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||||    
T  46297899 ttaacttcaccagaaaagtcattttcatgacttcaccatagaatttt 46297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 21193645 - 21193589
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttccttagtttt 72  Q
    |||||||||| |||||||||||| || |||||| ||||| |||||||||||| ||||    
T  21193645 ttaacttcaccagaaaagtcattctcatgactttaccatagaattttccttattttt 21193589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 47930666 - 47930714
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||| |||||||| |||||||||||| |||||||||    
T  47930666 ttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 49359628 - 49359676
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||||||    
T  49359628 ttaacttcacaaaaaaagtcattttcatgacttcaccatagaattttcc 49359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 4015499 - 4015442
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttccttagttttt 73  Q
    |||||||||  |||||||||||| || |||||||||||| ||||||||| || |||||    
T  4015499 ttaacttcatcagaaaagtcattctcatgacttcaccatagaattttccatatttttt 4015442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 22451004 - 22450956
Alignment:
Q  19 acttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    ||||||| |||||| ||||| || |||||||||||| ||||||||||||    
T  22451004 acttcaccagaaaaatcattctcatgacttcaccatagaattttcctta 22450956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 39282681 - 39282641
Alignment:
Q  27 agaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||| |||||||| |||||||||||| ||||||||||||    
T  39282681 agaaaaatcattttcatgacttcaccatagaattttcctta 39282641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 51213118 - 51213166
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| | |||||||||| || |||||||||||| |||||||||    
T  51213118 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 51213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 4166970 - 4166919
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  4166970 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcctta 4166919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 18494423 - 18494473
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| ||||||||||||||| |||||||||||  |||||||||||    
T  18494423 ttaacttcaccagaaaagtcattttcatgacttcaccacagaattttcctt 18494473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 41465557 - 41465509
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||    
T  41465557 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 41465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 44913709 - 44913662
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||    
T  44913709 ttaacttcac-ataaaagtcattttcgtgacttcaccatagaattttcc 44913662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 3176988 - 3176941
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaatttt 62  Q
    ||||||||||  ||||||||||||||||| |||||||||| |||||||    
T  3176988 attaacttcatcagaaaagtcattttcgtaacttcaccatagaatttt 3176941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 34441921 - 34441972
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    ||||||| || | ||||||||||||| |||||||||||| ||||||||||||    
T  34441921 ttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcctta 34441972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 2325525 - 2325575
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||||||||||||||||  | | |||||||||| |||||||||||    
T  2325525 ttaacttcacgagaaaagtcattcacataacttcaccatagaattttcctt 2325575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 4763676 - 4763628
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||  ||||||||||||||| |||||||| ||| |||||||||    
T  4763676 ttaacttcatcagaaaagtcattttcatgacttcatcatagaattttcc 4763628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 17245110 - 17245158
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    ||||||| || |||||||||||| ||| ||||||||||| |||||||||    
T  17245110 ttaactttaccagaaaagtcattctcgcgacttcaccatagaattttcc 17245158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 18947598 - 18947642
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaatt 60  Q
    |||||||||| |||||||| |||||| |||||||||||| |||||    
T  18947598 ttaacttcaccagaaaagttattttcatgacttcaccatagaatt 18947642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 19313900 - 19313852
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||||||||| |  |||||||||||| |||||||||    
T  19313900 ttaacttcaccagaaaagtcattctaatgacttcaccatagaattttcc 19313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 26357625 - 26357577
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||  ||||||||||||||| ||||||||||||  ||||||||    
T  26357625 ttaacttcatcagaaaagtcattttcatgacttcaccataaaattttcc 26357577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 36642035 - 36641983
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    ||||| ||||| |||||||||||| || |||||||||||| ||||||| ||||    
T  36642035 attaatttcaccagaaaagtcattctcatgacttcaccatagaatttttctta 36641983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 182 - 133
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  182 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcct 133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 4582943 - 4582894
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  4582943 attaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcc 4582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 8299238 - 8299192
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaatttt 62  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||    
T  8299238 ttaacttcaccagaaaagtcattttcgtgacttcaccatagaatttt 8299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 32432480 - 32432431
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  32432480 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcct 32432431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 43686064 - 43686015
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    ||||||||||   |||||||||||||||||||||||||| ||||||||||    
T  43686064 ttaacttcacccaaaaagtcattttcgtgacttcaccatagaattttcct 43686015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 5657619 - 5657667
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||    
T  5657619 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 5657667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8861308 - 8861260
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||| |||||||||||||| || |||||||||||| |||||||||    
T  8861308 ttaacttcgcgagaaaagtcattctcatgacttcaccatagaattttcc 8861260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 17842724 - 17842775
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||| | ||||||||||||  |||||||||||| ||||||||||||    
T  17842724 ttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcctta 17842775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 18797352 - 18797301
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||| | |||||||||| || |||||||||||| ||||||||||||    
T  18797352 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctta 18797301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 26524465 - 26524516
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    ||||| |||| |||||||||||| || |||||||||||| ||||||||||||    
T  26524465 ttaacatcaccagaaaagtcattctcatgacttcaccatagaattttcctta 26524516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 241024 - 241070
Alignment:
Q  19 acttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    ||||||| | ||||||||||||| |||||||||||| ||||||||||    
T  241024 acttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 241070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 25691683 - 25691721
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccat 54  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  25691683 ttaacttcacgagaaaagtcattctcatgacttcaccat 25691721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 32821191 - 32821241
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| | |||| |||||||| |||||||||||| |||||||||||    
T  32821191 ttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttcctt 32821241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 23402371 - 23402419
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||||||||| || ||||||| |||| |||||||||    
T  23402371 ttaacttcaccagaaaagtcattctcatgacttcgccatagaattttcc 23402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37109895 - 37109847
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| | ||||||||||||  |||||||||||| |||||||||    
T  37109895 ttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcc 37109847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 41765227 - 41765267
Alignment:
Q  27 agaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||||| || |||||||||||| ||||||||||||    
T  41765227 agaaaagtcattctcatgacttcaccatggaattttcctta 41765267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 36860471 - 36860420
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  36860471 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcctta 36860420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 22616542 - 22616492
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||||||||    
T  22616542 ttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcctt 22616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 36866810 - 36866762
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  36866810 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc 36866762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 40133433 - 40133385
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||    
T  40133433 ttaacttcaccacaaaagtcattttcgtgacttcaccatagaattttcc 40133385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 8742014 - 8742069
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttccttagttt 71  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||||||| ||||    
T  8742014 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctttgttt 8742069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 13956472 - 13956523
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    ||||||||| |||||||||||||||| |||||||||| | ||||||||||||    
T  13956472 ttaacttcatgagaaaagtcattttcatgacttcaccgtagaattttcctta 13956523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 12910398 - 12910348
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||||||||    
T  12910398 ttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcctt 12910348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 7693278 - 7693230
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| ||||||||||||||  |||||||||||| |||||||||    
T  7693278 ttaacttcaccagaaaagtcattttaatgacttcaccatagaattttcc 7693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 5112439 - 5112490
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    ||||||||||| | ||||||||||||| ||||||||||||  ||||||||||    
T  5112439 attaacttcaccaaaaaagtcattttcatgacttcaccataaaattttcctt 5112490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 10237462 - 10237415
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttc 63  Q
    |||||||||| ||||||||||||||| ||||||||| || ||||||||    
T  10237462 ttaacttcactagaaaagtcattttcatgacttcacaatagaattttc 10237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 35826609 - 35826660
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    ||||||||||| | |||||||||| || |||||||||||| |||||||||||    
T  35826609 attaacttcacaaaaaaagtcattatcatgacttcaccatagaattttcctt 35826660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 19119907 - 19119857
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| | |||||||||| || |||||||||||| |||||||||||    
T  19119907 ttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcctt 19119857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 39572868 - 39572818
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||| || |||||||||||| || |||||||||||| ||||||||||    
T  39572868 attaacttaactagaaaagtcattctcatgacttcaccatagaattttcct 39572818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 26317811 - 26317859
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| | ||||||||||||| |||||||| ||| |||||||||    
T  26317811 ttaacttcaccaaaaaagtcattttcatgacttcatcatagaattttcc 26317859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 35021198 - 35021248
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||||||||    
T  35021198 ttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcctt 35021248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 38812259 - 38812311
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    ||||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  38812259 attaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctta 38812311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 2704560 - 2704509
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||| ||||||||||||||| ||||||||||||  |||||||||||    
T  2704560 ttaacttcaccagaaaagtcattttcatgacttcaccataaaattttcctta 2704509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 4205164 - 4205114
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||  ||||||||||||||| |||||||||||| |||||||||||    
T  4205164 ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcctt 4205114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 55241266 - 55241315
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    ||||||||||| |||||||||||| || |||||||||||| |||||||||    
T  55241266 attaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 55241315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 9139295 - 9139244
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||| | |||||||| |||| |||||||||||| ||||||||||||    
T  9139295 ttaacttcaccaaaaaagtcaatttcatgacttcaccatagaattttcctta 9139244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 27396664 - 27396613
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||| ||||    
T  27396664 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttttctta 27396613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 51204627 - 51204580
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttc 63  Q
    |||||||||| ||||||||||||||  |||||||||||| ||||||||    
T  51204627 ttaacttcaccagaaaagtcatttttatgacttcaccatagaattttc 51204580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 17167761 - 17167715
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaatttt 62  Q
    |||||||||  ||||||||||||||||| |||||||||| |||||||    
T  17167761 ttaacttcatcagaaaagtcattttcgtaacttcaccatagaatttt 17167715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 17173338 - 17173292
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaatttt 62  Q
    |||||||||  ||||||||||||||||| |||||||||| |||||||    
T  17173338 ttaacttcatcagaaaagtcattttcgtaacttcaccatagaatttt 17173292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 20097491 - 20097537
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaatttt 62  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||    
T  20097491 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 28003152 - 28003197
Alignment:
Q  19 acttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    ||||||| |||||||||||| || |||||||||||| |||||||||    
T  28003152 acttcaccagaaaagtcattctcatgacttcaccatagaattttcc 28003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 38811862 - 38811813
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    ||||||||||| |||||| ||||| || |||||||||||| |||||||||    
T  38811862 attaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 38811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 3880075 - 3880124
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  3880075 ttaacttcaccagaaaagtcattctcgtgacttcaccatagaattttcct 3880124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 8513281 - 8513232
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||||||    
T  8513281 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 4318959 - 4319009
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| | |||||||||| || |||||||||||| |||||||||||    
T  4318959 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctt 4319009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 11084152 - 11084202
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    ||||||| || |||||||| |||||| |||||||||||| |||||||||||    
T  11084152 ttaactttaccagaaaagttattttcatgacttcaccatagaattttcctt 11084202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 19631797 - 19631747
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| |||||||||||| |  |||||||||||| |||||||||||    
T  19631797 ttaacttcaccagaaaagtcattcttatgacttcaccatagaattttcctt 19631747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 30353494 - 30353540
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaatttt 62  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||    
T  30353494 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 20768131 - 20768087
Alignment:
Q  19 acttcacgagaaaagtcattttcgtgacttcaccatcgaattttc 63  Q
    ||||||| |||||||||||| || |||||||||||| ||||||||    
T  20768131 acttcaccagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 21017248 - 21017284
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcacc 52  Q
    |||||||||| | ||||||||||||||||||||||||    
T  21017248 ttaacttcaccaaaaaagtcattttcgtgacttcacc 21017284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24662190 - 24662238
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||||||||| || |||||| ||||| |||||||||    
T  24662190 ttaacttcactagaaaagtcattatcatgactttaccatagaattttcc 24662238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 36695109 - 36695160
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctta 67  Q
    |||||||||  ||||||||||||||| |||||||||||| ||||||||||||    
T  36695109 ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcctta 36695160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 34895014 - 34894964
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||  ||||||||||||||| |||||||||||| |||||||||||    
T  34895014 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcctt 34894964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 40862466 - 40862416
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| |||||||| |||||||||||||||| || |||||||||||    
T  40862466 ttaacttcaccagaaaagttattttcgtgacttcactatagaattttcctt 40862416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 12876156 - 12876108
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||  |||||||||||||||||||||| ||||| |||||||||    
T  12876156 ttaacttcatcagaaaagtcattttcgtgacttaaccatagaattttcc 12876108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 16447029 - 16447067
Alignment:
Q  27 agaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  16447029 agaaaagtcattttcatgacttcaccatagaattttcct 16447067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 27082981 - 27083039
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttccttagttttta 74  Q
    |||||||||| |||||||||| | |  |||||||||||| |||||||||| ||||||||    
T  27082981 ttaacttcaccagaaaagtcagtctgatgacttcaccatagaattttcctaagttttta 27083039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 6098660 - 6098709
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    ||||||||||| | |||||| |||||| |||||||||||| |||||||||    
T  6098660 attaacttcaccaaaaaagttattttcatgacttcaccatagaattttcc 6098709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 13307670 - 13307622
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||| ||||| || |||||||||||| |||||||||    
T  13307670 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 13307622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 28220955 - 28221003
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| ||||||||||||||| |||||| | ||| |||||||||    
T  28220955 ttaacttcaccagaaaagtcattttcatgactttatcatagaattttcc 28221003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 35459840 - 35459888
Alignment:
Q  15 attaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttc 63  Q
    |||||||| |||| |||||||||| || |||||||||||| ||||||||    
T  35459840 attaactttacgaaaaaagtcattctcatgacttcaccatagaattttc 35459888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 41362565 - 41362517
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| | ||||||||||||| | |||||||||| |||||||||    
T  41362565 ttaacttcaccaaaaaagtcattttcataacttcaccatagaattttcc 41362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 1547331 - 1547281
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||||    
T  1547331 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 1547281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 2959792 - 2959743
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||  ||||||||||||||| |||||||||||| ||||||||||    
T  2959792 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcct 2959743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10182140 - 10182189
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||| | ||||||||||||| |||||||||||| ||||||||||    
T  10182140 ttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 10182189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 43579290 - 43579242
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||    
T  43579290 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 43579242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 4150490 - 4150537
Alignment:
Q  19 acttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    ||||||| |||||||||||| || |||||||||||| |||||||||||    
T  4150490 acttcaccagaaaagtcattatcatgacttcaccatagaattttcctt 4150537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 16415689 - 16415639
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||| |||||||||||| || |||||||||| | |||||||||||    
T  16415689 ttaacttcaccagaaaagtcattctcatgacttcaccttagaattttcctt 16415639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 22170798 - 22170748
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcctt 66  Q
    |||||||||  ||||||||||||||| ||| |||||||| |||||||||||    
T  22170798 ttaacttcattagaaaagtcattttcatgatttcaccatagaattttcctt 22170748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 13876919 - 13876968
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||| | ||||||||||||| | |||||||||| ||||||||||    
T  13876919 ttaacttcaccataaaagtcattttcataacttcaccatagaattttcct 13876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 18422695 - 18422646
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcct 65  Q
    |||||||||| | ||||||||||||  |||||||||||| ||||||||||    
T  18422695 ttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcct 18422646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 38823258 - 38823210
Alignment:
Q  16 ttaacttcacgagaaaagtcattttcgtgacttcaccatcgaattttcc 64  Q
    ||||||| || |||||||||||| || |||||||||||| |||||||||    
T  38823258 ttaacttaaccagaaaagtcattctcatgacttcaccatagaattttcc 38823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University