View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6142_low_5 (Length: 250)

Name: NF6142_low_5
Description: NF6142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6142_low_5
NF6142_low_5
[»] chr1 (3 HSPs)
chr1 (10-250)||(5565918-5566158)
chr1 (12-247)||(5566383-5566619)
chr1 (15-81)||(6408522-6408588)
[»] chr5 (4 HSPs)
chr5 (12-146)||(30665051-30665185)
chr5 (15-81)||(19424341-19424407)
chr5 (15-81)||(20089197-20089263)
chr5 (15-81)||(30822467-30822533)
[»] scaffold0504 (1 HSPs)
scaffold0504 (12-100)||(4231-4319)
[»] chr2 (5 HSPs)
chr2 (12-100)||(6002057-6002145)
chr2 (15-81)||(11749440-11749506)
chr2 (15-81)||(37015726-37015792)
chr2 (15-81)||(43802832-43802898)
chr2 (15-99)||(34507181-34507265)
[»] chr8 (1 HSPs)
chr8 (15-81)||(42612224-42612290)
[»] chr7 (2 HSPs)
chr7 (15-81)||(37170905-37170971)
chr7 (15-79)||(9214062-9214126)
[»] chr6 (2 HSPs)
chr6 (15-99)||(26336622-26336706)
chr6 (12-100)||(13051546-13051634)
[»] chr4 (2 HSPs)
chr4 (15-99)||(10226964-10227048)
chr4 (15-100)||(5055443-5055528)
[»] chr3 (1 HSPs)
chr3 (15-95)||(13112645-13112725)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 5566158 - 5565918
Alignment:
Q  10 cagagacacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggacatgtcgttgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  5566158 cagagacacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcaacttatctattggaggacaggtcgttgc 5566059  T
Q  110 cggtccgctaaatcttcaatgggatacttgttttcaattattagaaatagagatttcagtagacgagagagatagtaattctctttcgttgaagtggtta 209  Q
    || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5566058 cgatccactaaatcttcaatgggatacttgttttcaattatcagaaatagagatttcagtagacgggagagatagtaattctctttcgttgaagtggtta 5565959  T
Q  210 agcggcaatcttatctccaatgacctcaatgaacattcgcc 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5565958 agcggcaatcttatctccaatgacctcaatgaacattcgcc 5565918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 5566383 - 5566619
Alignment:
Q  12 gagacacatacttttcatttt-ccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggacatgtcgttgcc 110  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||  |||| |||||| |||||| |||||| ||    
T  5566383 gagacgcatacttttcatttttccaacaggtgaatgcaccatcacgttggaagatgtatacctgttactcaccttacctattgaaggacaagtcgttacc 5566482  T
Q  111 ggtccgctaaatcttcaatgggatacttgttttcaattattagaaatagagatttcagtagacgagagagatagtaattctctttcgttgaagtggttaa 210  Q
    |||| || ||||||||||||||||||||||||||||||| ||| |||||||||| ||  ||| ||||  |||  |||| |||||||  |||||||||||     
T  5566483 ggtctgccaaatcttcaatgggatacttgttttcaattagtaggaatagagattccaacagatgagatggatgttaatactctttcactgaagtggttag 5566582  T
Q  211 gcggcaatcttatctccaatgacctcaatgaacattc 247  Q
    | |||||||||||||||||||||  ||||||||||||    
T  5566583 gtggcaatcttatctccaatgactgcaatgaacattc 5566619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 6408588 - 6408522
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  6408588 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 6408522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 30665051 - 30665185
Alignment:
Q  12 gagacacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggacatgtcgttgccg 111  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||| | | || || ||||||||||  | ||| | |    
T  30665051 gagacacatacttttcattttcgaacaggtgaatgtacaatcacgctggaagatgtatatatgttacttggcataccttttggaggacaaattgttacgg 30665150  T
Q  112 gtccgctaaatcttcaatgggatacttgttttcaa 146  Q
    |||| | | |||||  |||||||| ||||||||||    
T  30665151 gtcctccacatctttcatgggatatttgttttcaa 30665185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 19424341 - 19424407
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  19424341 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 19424407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 20089197 - 20089263
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  20089197 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 20089263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 30822533 - 30822467
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  30822533 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 30822467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 4231 - 4319
Alignment:
Q  12 gagacacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggaca 100  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||| || || || ||||||| |||| || ||||||||||    
T  4231 gagacacatacttttcattttcgaacaggtgaatgtacaatcacgttggaagacgtgtatattttactcggcttaccttttggaggaca 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 6002145 - 6002057
Alignment:
Q  12 gagacacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggaca 100  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||| |||||||| | |||| || ||||||||||    
T  6002145 gagacacatacttttcattttcgaacaagtgaatgtacaatcacgctggaagatgtatatatgttacttggcttaccttttggaggaca 6002057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 11749440 - 11749506
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  11749440 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 11749506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 37015792 - 37015726
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  37015792 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 37015726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 43802898 - 43802832
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  43802898 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 43802832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 34507181 - 34507265
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggac 99  Q
    ||||||||||||||||||| ||  |||||||| ||||||||||||||||| |||||  | ||||||| |||| || |||||||||    
T  34507181 acacatacttttcattttcgaatgggtgaatgtacaatcacgttggaagacgtatattttttactcggcttaccttttggaggac 34507265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 42612224 - 42612290
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  42612224 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 42612290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 37170971 - 37170905
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcg 81  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  37170971 acacatacttttcattttcgaacgggtgaatgcacaatcacgttggaagacgtatatatgttactcg 37170905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 9214126 - 9214062
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttact 79  Q
    ||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  9214126 acacacacgtttcattttccaacgggtgaatgcaccatcaccttggaagatgtattcatgttact 9214062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 26336622 - 26336706
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggac 99  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||| || ||||||| |||| || |||||||||    
T  26336622 acacatacttttcattttcgaacgggtgaatgtacaatcacgttggaagacgtatatattttactcggcttaccttttggaggac 26336706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 13051546 - 13051634
Alignment:
Q  12 gagacacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggaca 100  Q
    ||||||||||||||| |||||| ||| ||||| || ||||||| ||||||||||||||| || ||||||| |||| || ||||||||||    
T  13051546 gagacacatactttttattttcgaacgggtgagtgtacaatcatgttggaagatgtatatattttactcggcttaccttttggaggaca 13051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 10227048 - 10226964
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggac 99  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| ||||| ||||| || ||||||| |||| || |||||||||    
T  10227048 acacatacttttcattttcgaacgggtgaatgtacaatcacgtttgaagacgtatatattttactcggcttaccttttggaggac 10226964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 5055528 - 5055443
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattggaggaca 100  Q
    ||||||||||||||||||| ||| |||||||| || ||||| |||||||| || || || ||||||| |||| || ||||||||||    
T  5055528 acacatacttttcattttcgaacgggtgaatgtactatcactttggaagacgtctatattttactcggcttaccttttggaggaca 5055443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 13112725 - 13112645
Alignment:
Q  15 acacatacttttcattttccaacaggtgaatgcacaatcacgttggaagatgtatacatgttactcgacttatctattgga 95  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||  | ||||||| |||| || |||||    
T  13112725 acacatacttttcattttcgaacgggtgaatgtacaatcacgttggaagatgtatattttttactcggcttaccttttgga 13112645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University