View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6143_low_1 (Length: 551)
Name: NF6143_low_1
Description: NF6143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6143_low_1 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 20 - 551
Target Start/End: Complemental strand, 48605570 - 48605039
Alignment:
| Q |
20 |
tacacgacggtgtgcactttggtggtataaaaggattctctgttgcagcaaaatatgcagcatccttttgggcggatgttatgaagacagtgcagcaaag |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48605570 |
tacacgacggtgtacactttggtggtataaaaggattctctgttgcagcaaaatatgcagcatccttttgggcagatgttatgaagacagtgcagcaaag |
48605471 |
T |
|
| Q |
120 |
gggattggcattgccgagagtcttttaccggactacagttgcaactggtggatatgcaagatcgctagcatataatcctaacaagatggagttatttaac |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48605470 |
gggattggcagtgccgagagtcttttaccggactacagttgcaactggtggatatgcaagatcgctagcatataatcctaacaagatggagttatttaac |
48605371 |
T |
|
| Q |
220 |
ggtgttttcttagaaaaattgaagcaagcgggcgttctatctggtgtgattgataactttgatatgacatttccatggcattttgataaccggtgtaacg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48605370 |
ggtgttttcttagaaaaattgaagcaagtgggcgttctatctggtgtgattgataactttgatatgacatttccatggcattttgataaccggtgtaacg |
48605271 |
T |
|
| Q |
320 |
atggagttcactatggaagggctccggcaaagatgacgtggaaagatggtcaaattggtcatcaatattttgtagaccttatgttagctcatgttcttct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48605270 |
atggagttcactatggaagggctccggcaaagatgacgtggaaagatggtcaaattggtcatcaatattttgtagaccttatgttagctcatgttcttct |
48605171 |
T |
|
| Q |
420 |
caatgcactgtgtgcaagatagccatgtagcttctgttagaaaagactttaaacttgaagactattgaggtagctttcacttagttaaacttttgcattt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48605170 |
caatgcactgtgtgcaagatagccatgtagcttctgttagaaaagactataaacttgaagactattgaggtagctttcacttagttaaacttttgcattt |
48605071 |
T |
|
| Q |
520 |
tctgaaaaattaggtttgatattctttctagc |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48605070 |
tctgaaaaattaggtttgatattctttctagc |
48605039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 25 - 548
Target Start/End: Complemental strand, 48611161 - 48610636
Alignment:
| Q |
25 |
gacggtgtgcactttggtggtataaaaggattctctgttgcagcaaaatatgcagcatccttttgggcggatgttatgaagacagtgcagcaaaggggat |
124 |
Q |
| |
|
|||||||| |||||| || ||||| || ||||||||| | |||| | ||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
48611161 |
gacggtgtccactttcgtagtatacgagcattctctgtgggagcagactatgcagcatctttttgggcagatgttatgaagacagtgaggcaaaggggat |
48611062 |
T |
|
| Q |
125 |
tggcattgccgagagtcttttaccggactacagttgcaactggtggatatgcaagatcgctagcatataatcctaacaagatggagttatttaacggtgt |
224 |
Q |
| |
|
||||| |||| ||||| |||||||||| ||| || ||||| ||||||||||||||||| ||||||| |||||||||||||||||| | || || ||||| |
|
|
| T |
48611061 |
tggcactgccaagagtgttttaccggaatacggtcgcaaccggtggatatgcaagatcactagcatttaatcctaacaagatggatgtgttcaatggtgt |
48610962 |
T |
|
| Q |
225 |
tttcttagaaaaattgaagcaagcgggcgttctatctggtgtgattgataactttgatatgacatttccatggcattttgataaccggtgtaacgatgga |
324 |
Q |
| |
|
||||||||| ||| | |||||| ||||| || | || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
48610961 |
tttcttagagaaactaaagcaaacgggcattgtctccggtgtgattgataactttgatatgacatttccgtggcattttgataaccgatgtaacgatgga |
48610862 |
T |
|
| Q |
325 |
gttcactatggaagggctccggcaaagatgacgtggaaagatggtcaaattggtcatcaatattttgtagaccttatgttagctcatgttcttctcaatg |
424 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
48610861 |
gttcattatggaagggctccggcaaagatgaagtggaaagatggtcaaattggtcatcaatattttgtggacctcatgttagctcatgttcttctcaatg |
48610762 |
T |
|
| Q |
425 |
cactgtgtgcaagatagccatgtagcttctgttagaaaagacttta--aacttgaagactattgaggtagctttcacttagttaaacttttgcattttct |
522 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||| ||| | || |||||||||||||||||||||| ||||||| |||| || |||||||||| | |
|
|
| T |
48610761 |
cactgtgtgcaagatagccatgcatcttttgttagaagagattatatgaacttgaagactattgaggtagtgttcacttggttacacgtttgcattttat |
48610662 |
T |
|
| Q |
523 |
gaaaaattaggtttgatattctttct |
548 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
48610661 |
gaaaaattagggttgatattctttct |
48610636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University