View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6144_high_1 (Length: 596)
Name: NF6144_high_1
Description: NF6144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6144_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 581
Target Start/End: Complemental strand, 41054742 - 41054180
Alignment:
| Q |
13 |
aaaatcacttggaattttctgattgttaaatagagtttcactcggtattgttgattgcttgtgcctccaagcacagatgattctttttacatgcaatttc |
112 |
Q |
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| T |
41054742 |
aaaatcacttggaattttctgattgttaaatagagtttcactctgtattgttgattgcttgtgcctccaagcacagatgattctttttacatgcaatttc |
41054643 |
T |
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| Q |
113 |
acccaatctaaaaaacaaaccggtagaatgaatttgatctccttttatgttggatgtttgatgcagacaagctgctgctgctgctacagaagcatgaatg |
212 |
Q |
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| T |
41054642 |
acccaatctaaaaaacaaaccggtagaatgaatttgatctccttttatgttggatgtttgatgcagacaagctgctgctgctgcgacagaagcatgaatg |
41054543 |
T |
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| Q |
213 |
caagtcataggattaatgaccttatccagtaatcaacatattatgttgggaatctgggttagagcattttctaaactatgttcttattggctaaaaattg |
312 |
Q |
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| T |
41054542 |
caagtcataggattaatgaccttatccagtaatcaacatattatgttgggaatctgggttagagcattttctaaactatgttcttattggctaaaaattg |
41054443 |
T |
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| Q |
313 |
gttttaccattggagagcaagttggtgcagagtttgatactaagaacaa-nnnnnnnnnnnnnngagggaactctttaagagttatgctcttagctttaa |
411 |
Q |
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| T |
41054442 |
gttttaccattggagagcaagttggtgcagagtttgatactaagaacaatttttatttttttttgagggaactc-ttaagagttatgttcttagcttta- |
41054345 |
T |
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| Q |
412 |
nnnnnnnnnnnnnnagaagaatcaataatgctaaatttaacgtggggtaacttgacttgaacttattttgaattttctatgagctgcataattggagtta |
511 |
Q |
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| T |
41054344 |
-----tttttttttagaagaatcaataatgctaaatttaacgtggggtaacttgacttgaacttattttgaattttctatgagctgcataattagagtta |
41054250 |
T |
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| Q |
512 |
aaaatggcagggttattaaattggatatgtcacaagtgaactcaccaacataaagttactccgaagaata |
581 |
Q |
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| T |
41054249 |
aaaatggcagggttattaaattggatatgtcacaagtgaactcaccaacataaagttactccgatgaata |
41054180 |
T |
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