View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6144_high_3 (Length: 337)
Name: NF6144_high_3
Description: NF6144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6144_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 1574066 - 1573737
Alignment:
| Q |
1 |
gaacctcttccacaatctatattgtcattgctaatattttctttagatgtcaatgattcaatctcaaattcagcaaatatgtccaactgcnnnnnnnnnn |
100 |
Q |
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| T |
1574066 |
gaacctcttccacaatctatattgtcattgctaatattttctttagatgtcaatgattcaatctcaaattcagcaaatatgtccaactgcaaaaaaaaa- |
1573968 |
T |
|
| Q |
101 |
nttaggaaatgaaagagttgagacaaataattttatcacaaataagaaatttattggttttagaaataaccttnnnnnnnnnnnnnnnnnnntcaagtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1573967 |
-ttaggaaatgaaagagttgagacaaataattttatcacaaataagaaatttattggttttagaaataaccttaaaacaaaaaagcaaaaaatcaagtaa |
1573869 |
T |
|
| Q |
201 |
tatgataacttagaaaatgctatagacaaaacctgtgttgcttgagtaatgttcaatggaacaatagagccaggtgtaacaactacttctgcatattcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1573868 |
tatgataacttagaaaatgctatagacaaaacctgtgttgcttgagtaatgttcaatggaacaacagagccaggtgtaacaactacttctgcatattcat |
1573769 |
T |
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| Q |
301 |
cactactcagtcttaagctttctacttcttct |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
1573768 |
cactactcagtcttaagctttctacttcttct |
1573737 |
T |
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