View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6144_high_6 (Length: 280)
Name: NF6144_high_6
Description: NF6144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6144_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 40942054 - 40942306
Alignment:
| Q |
18 |
ttttgaaggtactgcttatatttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40942054 |
ttttgaaggtaatgcttatatttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcag |
40942153 |
T |
|
| Q |
118 |
tcttcaaagttcctgacggttccaagcccccaggcactgttgcagctgtgctgaaggtaatttagatcattgcttgtggaaggacatgttctttttcatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40942154 |
tcttcaaagttcctgacggttccaagcccccaggcactgttgcagctgtgctgaaggtaatttagatcattgcttgtggaaggacatgttctttttcctt |
40942253 |
T |
|
| Q |
218 |
ccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattttggtct |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40942254 |
ccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattttggtct |
40942306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 21507090 - 21507227
Alignment:
| Q |
39 |
ttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcagtcttcaaagttcctgacggtt |
138 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||| ||| ||||||||||| || ||||||||| | |||||||| || ||||| || | || || | || |
|
|
| T |
21507090 |
ttacaggtacttaaaaagcacggtgttgaaaaatatgatcctacaaatgaaccatttgatccaaacaggcataatgccatcttccaaatacccgatgctt |
21507189 |
T |
|
| Q |
139 |
ccaagcccccaggcactgttgcagctgtgctgaaggta |
176 |
Q |
| |
|
||||||| ||||||||||||| || ||| || |||||| |
|
|
| T |
21507190 |
ccaagcctccaggcactgttggagttgttctcaaggta |
21507227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University